UFO01075.5prime Sequence
1188 bp (1016 high quality bases) assembled on 2008-07-03
> UFO01075.5prime
CATAACATCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCT
CCTGGAAGGACAGTCTCACGAGCATTCCGGGCACGGTGGCGCAGTTGATT
AACGAGAGCGCCAGCAACCTGTTACACGCCTCATCCACGCTGGGATCAAC
AGTTGGCCTTGGAGGCTCTGGCTCCACTGGATCTGGATCCGAGGCCGGAG
GCTCCGAGGAAAGTGGTCCACAAGGTGCGGAGTACAGGGCGTTGCCCATT
CCCGCGTCCTTGGTGCGCGAGCAATGGCGCCTAATCTTCACCAGCGATGC
CAATATCCAGGATTTGCAGGCGGCCATCGCCCATTGCAGAGATCTCGTCC
TGCTGAGCGAGGAACTCAGCGAGGAGCGTCGCTGGTTGGTGCGGCACCTG
GTAGATTTGCGATACTCACTGCAGGAGCTGGAGGAGGCCCAGGAGCAGCA
TTCCCTATCGTCGGACATGGTAGTTATGAATGCCATACGTGCTGTGGTGG
GTCATCATTTTGTGCCCCATCACCCGCATCATGGCAAACGGAATCGTCTG
CAGGCAGCCGCCAAGAGGAACTACTGTGACCACTGCACCACCATTATTTG
GAGTGTGGTGCAGAACTCGTACGTGTGCAGCGATTGCGGATTCCTGGTCC
ATCAGAAGTGCATCGATGGCGTGAAGAGGGTTTGTGCCCATGTCCTGGTT
TCAGAGCGGCAGCATCCCATTTCGGAGATATGTCCAGAAATCGGACTCGC
CTCCCAGGGATACAAGTGCGCCGAGTGCGGGACGATGCTAAATATAAAAA
ATACCTGGATTGAGCCGCGTCTATGCGACTATAGTGGATTGTACTACTGC
CCTCGCTGCAACTGGAACGACAGTAACTTTTATACCAGCCCGCATTATCC
ACAATTGGACTTTTCGCCACGCAGAGTGTCGCGCACGGCGCTCCAGAGAT
TAGTTGTTCCTAATAAACCGCTCATTCGCTTGAGGAGACATCCCAAGCTG
TTTTGTGTTCGTAGAAATTGTTGTGCGTAAGAACTTTCGCAAATCTGTGC
ATATGCGCCACTATCTGCTGCTGCAGATTGCAGCGGTGAGCTGATGATCA
CCACTGGAGTCGGCACTCTGACAGTCATGATTCATCTAGTATCCGCAGTG
AATCTGACGCTGAAGATTTCTGCAAGGATTTTCTCAAG
UFO01075.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11534-RA | 1637 | CG11534-RA | 78..1129 | 44..1081 | 4765 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12132223..12132976 | 44..797 | 3770 | 100 | Plus |
| 3L | 28110227 | 3L | 12133029..12133216 | 798..982 | 695 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:52 has no hits.
UFO01075.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:20 Download gff for
UFO01075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-RA | 52..1086 | 44..1067 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:04 Download gff for
UFO01075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-RA | 78..1112 | 44..1067 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:14 Download gff for
UFO01075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-RA | 78..1112 | 44..1067 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:14 Download gff for
UFO01075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12132223..12132976 | 44..797 | 100 | -> | Plus |
| 3L | 12133029..12133331 | 798..1085 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:04 Download gff for
UFO01075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12126129..12126431 | 798..1085 | 92 | == | Plus |
| arm_3L | 12125323..12126076 | 44..797 | 100 | -> | Plus |
