UFO01076.5prime Sequence
1205 bp (1053 high quality bases) assembled on 2008-07-03
> UFO01076.5prime
GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGGTGGTCAATTTCAAGGTGTTCAAGAAGTGTTCCCCGAACAACATGAT
CACGCTCTACATGAACAGGCGTGATTTTGTAGATTCCGTGACTCAGGTGG
AACCCATTGATGGAATCATTGTGCTGGACGATGAGTACGTGCGCCAGAAC
CGCAAGATCTTCGTGCAGTTGGTCTGCAATTTCCGATATGGGCGCGAGGA
CGACGAGATGATCGGTCTGCGGTTCCAGAAGGAACTGACCCTGGTCTCGC
AGCAGGTGTGCCCACCCCAGAAGCAGGACATCCAGTTGACCAAGATGCAG
GAGCGTCTGCTGAAGAAGCTTGGCTCCAATGCCTATCCCTTCGTGATGCA
GATGCCACCAAGCTCGCCGGCCTCGGTGGTTCTCCAGCAGAAGGCCAGTG
ACGAGAGCCAGCCCTGCGGAGTCCAGTACTTCGTAAAGATCTTTACCGGA
GACAGCGACTGCGATCGATCGCATCGCAGGAGCACCATTAACCTGGGCAT
CCGCAAGGTGCAGTACGCACCGACCAAGCAGGGCATCCAGCCCTGCACCG
TCGTTCGCAAGGACTTCCTTCTGTCGCCCGGAGAGCTCGAACTGGAGGTC
ACCCTCGACAAGCAGCTGTACCATCACGGCGAGAAGATCTCGGTGAACAT
CTGCGTGCGCAACAACTCCAACAAGGTGGTGAAGAAGATCAAGGCCATGG
TGCAGCAGGGCGTCGATGTGGTCCTGTTCCAGAACGGTCAGTTCCGCAAC
ACGATCGCCTTCATGGAGACGAGCGAGGGATGTCCCCTGAACCCGGGATC
CAGCCTGCAGATGTCATGTATCTGGTGCCCACCCTGGTGGCCAATTGCGA
CCGCGCAGGCATCGCCGTTGAGGTGATATCAAGCGCAAGACACAGCTCTG
GGCCTCGACCACACTTATTGCCAGTCAGATGCGAGGGATGCCTTTGGCAT
ATTGTTTCATATGCTGTGAGTCAGCTTTTCTGGGAGCCCTGGGCGGCGAG
CTCTGCCTGAGCTACATTATTCTGATGCACCGGAGCAGTCGCAGTCGACT
GAGCGAGGGATCATGAAGCGCAAGCTTCTAGACATCGTTGGACGAGCCTA
GTAACGGCCATATCTAATCATATTTAGCTTATATCGCCACGACACTAGCC
TATAG
UFO01076.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arr1-RB | 2327 | CG5711-RB | 120..1161 | 51..1081 | 4885 | 98.7 | Plus |
| Arr1-RA | 1435 | CG5711-RA | 120..1161 | 51..1081 | 4885 | 98.7 | Plus |
| Arr1-RC | 1356 | CG5711-RC | 150..1082 | 160..1081 | 4340 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18078915..18079723 | 159..965 | 3835 | 99.4 | Plus |
| 2L | 23513712 | 2L | 18078388..18078496 | 51..159 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:34:12 has no hits.
UFO01076.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:04 Download gff for
UFO01076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arr1-RA | 113..1179 | 43..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:54 Download gff for
UFO01076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arr1-RA | 110..1176 | 43..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:29 Download gff for
UFO01076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arr1-RA | 110..1176 | 43..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:29 Download gff for
UFO01076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18078378..18078496 | 43..159 | 96 | -> | Plus |
| 2L | 18078916..18079723 | 160..965 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:54 Download gff for
UFO01076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18078378..18078496 | 43..159 | 96 | -> | Plus |
| arm_2L | 18078916..18079723 | 160..965 | 99 | -> | Plus |
