UFO01077.5prime Sequence
1221 bp (1049 high quality bases) assembled on 2008-07-03
> UFO01077.5prime
CGGCCGCATAACAACGTATAGCATACATTATACGAAGTTATCAGTCGACA
TGGCAAAGTCGACACTTTATGCTGCTGGGGTGACCTGTCTGGGCTTTATT
TGCTTCGCCTTGGCATCTGTGGCCATTGGCATACCCATTTGGGGTTACTA
CGATAGTCCATCGGGCGGCTATGACTTCGATCGAGGTTATTTCGGACCGT
TTAAGGTCTGCAAGCAATTGACTTATAATCGCGAGAAATGCGGCAACGAC
GTGTCCAAGTTTAGATTAAGTAATGCGGTTTTTGTCAGTGGACTCTTGGC
CATTGGCAGCTCAGCTGTGCTGGGCATCTTCTGCATTCTGTCGGTCATTC
AACACGCGATGATCTCATCCAGGGAGAAGGTGGTTATGCCCTACACAACT
CTAGTGATAGTGAAGTTAATGTTGGCATTGCTGGGAGGTGTACTGGCCAT
CATAGCGACGGTTTTGTTTGCTCTGCAAATTGATGAGCAGGAGCGCTATG
GCTTCAAGATATCGCGGGGCATTTCCTTCTATATACAGATTGTGGCTATT
GTTTTGACAATTGCTCTGTTCGTGGCCGCCCTGTACGATGTGATCTACTC
GCGCAGTCCAGGCGGAGATCCCACAATGGCGCTGGATGTGTCATCTCCGG
GCAGTGCCACTACGTTCAATAATCCTGGTTTCAAGGAGCCTCGCAGTCGC
AACGGCGTTTCGGTGACGGACGCATCCGGTAAGCCCTACAGCGGAATCCG
GAATGGAGCGGGAACGGCGGGCAGCGTGGCCTCCATGAGCACCACCGTGA
CCAGCGTGTCCAATGGATCCACCCTTGACTCGGTGACTCGTTCACCGCTG
CGATCGAGTCTGAAGAAGCCGAGACCACGGCCGGATCCAACGTTAGGCAT
TCAAAATCCCGGCTATTCTGGATCCGGAAGCTCGCCACCTATGCGGCGCA
ATGGAGCGTGAGACGTCCGATTCAGACGCACAGCACCGAGGTGGCAAGCT
TTCTAGACCATTCGTTTGGCGCCGCGGGCCCAGGTAAGTGTCATATCATA
TCATATCATAATCATATCACACTAGCCTAGAGATCCTGGTCATGACTAGG
CTGATTCTCACAATAAAAACGCCCGGCGGCACGAGCGTTCTGAACATCCG
ATTGAATCCTGAAGTCTTACTGTCATCTTATCAACGGAATCCCACGGCGA
GCCTCGTATATACCAAATTAT
UFO01077.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13698-RC | 1617 | CG13698-RC | 616..1565 | 48..993 | 4635 | 99.5 | Plus |
| CG13698-RB | 2418 | CG13698-RB | 702..1651 | 48..993 | 4635 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18089184..18089646 | 993..535 | 2120 | 98.7 | Minus |
| 3L | 28110227 | 3L | 18090009..18090176 | 440..273 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 18090447..18090564 | 165..48 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 18090279..18090387 | 272..164 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 18089846..18089948 | 538..436 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:59:43 has no hits.
UFO01077.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:22 Download gff for
UFO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 674..1636 | 39..998 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:01 Download gff for
UFO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 693..1655 | 39..998 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:33 Download gff for
UFO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 693..1655 | 39..998 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:33 Download gff for
UFO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18089180..18089642 | 539..998 | 98 | <- | Minus |
| 3L | 18089846..18089946 | 438..538 | 100 | <- | Minus |
| 3L | 18090012..18090176 | 273..437 | 100 | <- | Minus |
| 3L | 18090279..18090386 | 165..272 | 100 | <- | Minus |
| 3L | 18090448..18090573 | 39..164 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:01 Download gff for
UFO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18082280..18082742 | 539..998 | 98 | <- | Minus |
| arm_3L | 18082946..18083046 | 438..538 | 100 | <- | Minus |
| arm_3L | 18083112..18083276 | 273..437 | 100 | <- | Minus |
| arm_3L | 18083379..18083486 | 165..272 | 100 | <- | Minus |
| arm_3L | 18083548..18083673 | 39..164 | 96 | | Minus |
