UFO01079.5prime Sequence
1189 bp (1039 high quality bases) assembled on 2008-07-03
> UFO01079.5prime
GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGGAGAGTGCCCTGCCGGTGGCCGAGTTTCAGCAGATAAAGCTGCGTCC
GGTGCCAAAGGTCAAACGCCGAGCCCCTCAGCCGCCAGTGAGCCTTCGCC
TGAAGCATAAAAATACTTCTGCCACCACAAAGACAACCACGCTCACCACC
CCCGCCAAACTGTATGGCAAGGATCTGAGTGAGTACGATGATGTGGATGT
GGAGAGCCTGCTGGCCCAGCTCTCCCCCGAGGAGATAACCATACTGGCCA
AAGAAGTGGATCCCGATGACAACTTCCTGCCGCCAGACCAGCGCAATAGC
TATGAGTGCACCAAGGAAGCCACCGGGCCTCTCAATCGCAAGCAGCTGAT
CGAGCACATCAATAAGCAGGCCATCGAGACCCCGGATCAGCCGGAGTTCG
AGCCGTTCGTTCAGGGCAAGGTTCGTGGAAAGAAGTGGGTCCCACCGCCA
AGGGATGCCCGCGACATCGAGGCCGAAGAACAAATCGCCATTGACATGGG
CGAGGAGTACGAACACGCCCTTAACGATGCCACGCAGGAGGAGATCATCG
ATCTGGCCGCCATCCTCGGCTTCCACTCGATGATGAATCAGGACCAGTAC
CACGCCTCCTTGCTCAACAAGGGTCAGCCCGTGGGCCTGGGATGGGATGG
CATTACGAAATCCACTCAGCAGAAGCTCTTCCCTATGGATCCGCCCAACA
ACACAGATGTGGAGGAATCCATCAAGCGGGTCAAGGACGATGACTCCAAG
CTGATTGACCTCAACTTGAACAACATTAAGAACATCTCGGACGAGAAACT
CGAGCAACTGTTTGCCGCACTGCCTCAGAAGAACATTTGGAAGTCCTCTC
GCTAACAAATGTGGGCCTCACCGACAGACAGCCCTCCTGTTAGCCGCGGC
CATAGAGAAGAGCAAAACCCTGAGAGTATTAAATGTCGAGACCACTTTAT
CAGTCCGCCGTGATTGTTAAGTGTGCAGCCCTGCTCAGTGCACACCATCG
AGAGTTTACGACCTCATCAGCGTCTGCGTCTGGCACAGATCGAATGCATC
ACGACTGATGAAGACTCGTCCTGCTGCCCTGGCTGGACTGATCAGAGCGA
CGATGCGTACTGCAGGCAACATTCGAAGAATCCGTGTCA
UFO01079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RB | 2508 | CG1539-RB | 160..1200 | 51..1078 | 4870 | 98.6 | Plus |
| tmod-RJ | 2753 | CG1539-RJ | 519..1445 | 165..1078 | 4300 | 98.4 | Plus |
| tmod-RI | 3000 | CG1539-RI | 766..1692 | 165..1078 | 4300 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30572023..30572535 | 318..830 | 2565 | 100 | Plus |
| 3R | 32079331 | 3R | 30572597..30572794 | 829..1022 | 790 | 98 | Plus |
| 3R | 32079331 | 3R | 30571809..30571962 | 165..318 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 30571316..30571429 | 51..164 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:04 has no hits.
UFO01079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:42 Download gff for
UFO01079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RB | 150..1193 | 41..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:40 Download gff for
UFO01079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RB | 150..1193 | 41..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:28 Download gff for
UFO01079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RB | 150..1193 | 41..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:28 Download gff for
UFO01079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30571295..30571429 | 35..164 | 92 | -> | Plus |
| 3R | 30571809..30571961 | 165..317 | 100 | -> | Plus |
| 3R | 30572023..30572535 | 318..830 | 100 | -> | Plus |
| 3R | 30572599..30572850 | 831..1070 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:40 Download gff for
UFO01079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26397017..26397151 | 35..164 | 92 | -> | Plus |
| arm_3R | 26397531..26397683 | 165..317 | 100 | -> | Plus |
| arm_3R | 26397745..26398257 | 318..830 | 100 | -> | Plus |
| arm_3R | 26398321..26398572 | 831..1070 | 94 | | Plus |
