UFO01080.5prime Sequence
1204 bp (1044 high quality bases) assembled on 2008-07-03
> UFO01080.5prime
CGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACA
TGGCAACCACTCCACGCAGCGGCGGTGCCAGCGGCACTGGAACGGCGCAG
CGGCCCAATGGCACCTCGCAGAACAAAAGCTGCCAATTCAAGTTGGTGCT
CCTCGGCGAGTCCGCTGTGGGCAAGTCCTCACTGGTGCTGCGCTTCGTCA
AGGGACAGTTCCACGAGTACCAGGAGAGCACGATAGGTGCGGCCTTTCTG
ACACAGACTATTTGCATAGAGGACACTGTCGTTAAGTTCGAGATCTGGGA
CACGGCTGGCCAGGAGCGGTACCACAGCTTAGCTCCCATGTATTATCGAG
GAGCGCAGGCCGCTATTGTCGTCTATGATATACAGAATCAGGACAGTTTT
CAGCGTGCGAAGACCTGGGTCAAGGAACTGCATAAACAAGCCTCACCAAA
CATTGTCATTGCGCTGGCCGGCAACAAGGCAGATTTGTCAAACATTCGCG
TCGTAGAGTTCGATGAAGCGAAGCAATATGCCGAGGAGAACGGGCTGCTG
TTCATGGAAACCTCCGCCAAGACGGGCATGAATGTGAACGACATCTTCTT
GGCCATTGCCAAGAAACTACCTAAGAACGATGGCGCCAACAATCAGGGAA
CCAGCATAAGGCCGACTGGAACCGAAACAAATCGACCGACGAACAACTGC
TGCAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAGCATTCTGCCGACT
GCAGCCATCACAAACGCATGATGACTGATCGCAGCGCATCAGCACTGTCC
GCCTTGCGTATAATATTGCCCATGTGAAACGGGGGCGAGAGTGTCAATGC
ACGTTAATCAAACTGGGTGACTCACCAGGATGCTGAACGAAACATTCATA
GCTAGGATTGGCAGTTCACGGTAACGCCCACTCTTTGCAATATATGTGTT
TGGA
UFO01080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab5-RI | 1775 | CG3664-RI | 274..931 | 49..706 | 3290 | 100 | Plus |
| Rab5-RH | 1772 | CG3664-RH | 275..932 | 49..706 | 3290 | 100 | Plus |
| Rab5-RG | 1785 | CG3664-RG | 284..941 | 49..706 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2361157..2361429 | 321..49 | 1365 | 100 | Minus |
| 2L | 23513712 | 2L | 2360633..2360801 | 608..440 | 845 | 100 | Minus |
| 2L | 23513712 | 2L | 2360971..2361093 | 440..318 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 2360472..2360570 | 706..608 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:21 has no hits.
UFO01080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:31 Download gff for
UFO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab5-RF | 216..877 | 46..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:42 Download gff for
UFO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab5-RG | 280..941 | 46..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:21 Download gff for
UFO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab5-RG | 280..941 | 46..706 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:21 Download gff for
UFO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2360472..2360569 | 609..706 | 100 | <- | Minus |
| 2L | 2360633..2360801 | 440..608 | 100 | <- | Minus |
| 2L | 2360972..2361092 | 319..439 | 100 | <- | Minus |
| 2L | 2361160..2361433 | 44..318 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:42 Download gff for
UFO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2360472..2360569 | 609..706 | 100 | <- | Minus |
| arm_2L | 2360633..2360801 | 440..608 | 100 | <- | Minus |
| arm_2L | 2360972..2361092 | 319..439 | 100 | <- | Minus |
| arm_2L | 2361160..2361433 | 44..318 | 98 | -> | Minus |
