UFO01082.5prime Sequence
1201 bp (1032 high quality bases) assembled on 2008-07-03
> UFO01082.5prime
CGGCCGCATAAATCGTATAGCATACATTATACGAAGTTATCAGTCGACAT
GTGGTCGCCGCGGGTTGCCCTACTTTTCCTGGCCCTAGCACTTAGCCAAC
CGGACGAGTTGGTGGAGGCCGCTGGTCCGCTGAAGGTGCTGGGTCTTTTT
CCCCATCCCGGAGTTAGCCACTTCCACTTCTTCCACCCCATCATGAAGGG
TCTGGCCGAGGCGGGTCATGACGTGAGCGTGGTTTCCCACTTCCCGGACA
AGCATCCGGTTGCCCACTACAAGGATTTCCCCCTCACCGGAATGGACAAG
CTCACGAACAGTGTTGATCTCAAGTTTTTCGAGAAGCGCACATTCTACAG
TCACTTCCAGGAGTTCTTCCTGCTGTACGACTGGGGCAAACAGACATGCA
ACCTGACGCTCCGTTCGGAAGCACTGCAGCAGATCCTCAGGCGTCCGGGA
CGCTTTGATGTGATCATCATGGAGCAATTCAACACTGACTGCATGATGGG
AGTGGCCCACCAGCTCCAGGCGCCGGTGATCGCCTTGAGCAGCTGTGTGA
TGATGCCCTGGCACTACGAGCGAATGGGAGCTCCTTTGATACCCTCTCAC
ATCCCGGCGCTCTTCATGGCCCAGTCGCAGCACATGAACTTTGGGGGACG
ACTGGCCAATTGGTTCAGCACCCACGCCTTAAATTGGATGTACAAATTAC
TATCGGTTCCCGCTGCCGACGCCATGGTTCAGTACAAATTCGGCCATGAC
GTGCCTTCGGTGGGCGAGCTGGTGAAGAACACATCCATGTTCTTTGTGAA
CCAGCACTACTCGCTGTCTGGACCCAAGGTAACGCCGCCCAATGTCATCG
AGCTGGGTGGCATCCACATCCAGAAATCGAAGCCTCTGCCTGCCGATCTG
CAGCGCATTCTGGACATGCTGAGGAAGGAGTGATCCTGATTAGTTGGGGA
TCAATGATCCGGGCGAATTCCCTGTCGGCGCGAAAAGGGATGCATTATTC
GGCGGTGCTCGATTAAGCAGAAGTTATCTGGAATGGAAAAACGAAACACT
GCTTAACAGCACCAACATGCACATATGAAGTGAGCCACACGCGATATCTC
TGCAATCCAAACGTCAGTTTCATAGTCCCACGGCGACCAGGACTCGAGCA
CTTACTGTGGATTCATGCTGCCAGCCCATGTTATGGGCGACTCAGGTTTG
T
UFO01082.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17323-RD | 2212 | CG17323-RD | 140..1244 | 49..1135 | 4975 | 97.7 | Plus |
| CG17323-RC | 1988 | CG17323-RC | 79..1183 | 49..1135 | 4975 | 97.7 | Plus |
| CG17323-RE | 2112 | CG17323-RE | 203..1307 | 49..1135 | 4975 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18824795..18825167 | 323..695 | 1865 | 100 | Plus |
| 2L | 23513712 | 2L | 18825234..18825603 | 696..1057 | 1420 | 97.3 | Plus |
| 2L | 23513712 | 2L | 18824306..18824581 | 49..324 | 1380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:22:46 has no hits.
UFO01082.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:50 Download gff for
UFO01082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17323-RA | 31..1124 | 49..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:25 Download gff for
UFO01082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17323-RE | 203..1296 | 49..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:47 Download gff for
UFO01082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17323-RE | 203..1296 | 49..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:47 Download gff for
UFO01082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18824306..18824581 | 49..324 | 100 | -> | Plus |
| 2L | 18824797..18825167 | 325..695 | 100 | -> | Plus |
| 2L | 18825234..18825708 | 696..1148 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:25 Download gff for
UFO01082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18824306..18824581 | 49..324 | 100 | -> | Plus |
| arm_2L | 18824797..18825167 | 325..695 | 100 | -> | Plus |
| arm_2L | 18825234..18825708 | 696..1148 | 93 | -> | Plus |
