UFO01089.5prime Sequence
1179 bp (1023 high quality bases) assembled on 2008-07-03
> UFO01089.5prime
CCGCATAACATCGTATAGCATACATTATACGAAGTTATCAGTCGACATGC
CAGTGAAAAAGCAAGAAGCTCATCGGGCTCTCGAGCTGCTCGAGGACTAC
CACGCGAGACTTTCGGAGCCGCAGGATCGGGCGCTGCGTATTGCAATCGA
ACGCGTTATACGCATATTTAAATCTCGCTTGTTTCAAGCGCTGTTAGATA
TACAAGAATTCTATGAATTGACATTATTGGATGACTCGAAGAGCATACAA
CAAAAGACAGCGGAGACCTTGCAAATTGCAACCAAATGGGAAAAGGATGG
CCAGGCAGTCAAAATAGCTGATAATCAGCGCATGCGCATCGAATCGGACA
CGGAAAATGCCAAGGAGCCAACTGTCGAGCAGCAGCAAAAGCAGCAGCAA
GCGCAGCAGCGCAGTTCCCGCTCCCCGCAGCAGCAGAATCCGCAGCAGCA
GCAGGGATCCAAATCGAGGAGCGGGTCCCAGACTTCACAGATACAGATAC
AGTCACTTACACAGACATACCCAAACGCACACCAGCGCAAGCGAGTCCTC
GTGAGCCTCCATCCACATCAACATCAACATCAAAGCCAAATTCAACACCA
ACACCATTACCAACTTCGCCATAACAACGGCATTCAAGCCAAAATGCTTA
AGCGCGCTTTTGAGTCCACCGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTTAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGACCTGAATCGC
CCAGCGCATCAGCACCTTGTCGCCTTGGCGTATTATAATTGCCCATGGTG
AAACGGGGCGAGAGTTGTCATATCTGTCCACGTATCAACCTGGTGAACTC
ACCAGGAATGCTGAACGAAAACCTTCCATACGTAGGCATGGCAGCTTCAC
GTAACGGCCCATCTTTGCAGAATATGTGT
UFO01089.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlg1-RI | 2114 | CG1725-RI | 371..994 | 47..670 | 3120 | 100 | Plus |
| dlg1-RJ | 2102 | CG1725-RJ | 359..982 | 47..670 | 3120 | 100 | Plus |
| dlg1-RC | 2554 | CG1725-RC | 811..1434 | 47..670 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11387986..11388171 | 485..670 | 930 | 100 | Plus |
| X | 23542271 | X | 11387772..11387933 | 323..484 | 810 | 100 | Plus |
| X | 23542271 | X | 11376840..11376973 | 64..197 | 670 | 100 | Plus |
| X | 23542271 | X | 11381854..11381980 | 196..322 | 635 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2285..2538 | 358..614 | 222 | 57.7 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 549..634 | 560..644 | 130 | 62.8 | Plus |
| rover | 7318 | rover ROVER 7318bp | 1930..1997 | 575..642 | 123 | 68.1 | Plus |
UFO01089.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:52:57 Download gff for
UFO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RC | 832..1468 | 38..679 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:46 Download gff for
UFO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RC | 804..1440 | 38..679 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:15 Download gff for
UFO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RC | 804..1440 | 38..679 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:15 Download gff for
UFO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11387986..11388177 | 485..679 | 97 | == | Plus |
| X | 11376842..11376973 | 66..197 | 100 | -> | Plus |
| X | 11381856..11381980 | 198..322 | 100 | -> | Plus |
| X | 11387772..11387933 | 323..484 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:46 Download gff for
UFO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11270875..11271006 | 66..197 | 100 | -> | Plus |
| arm_X | 11275889..11276013 | 198..322 | 100 | -> | Plus |
| arm_X | 11281805..11281966 | 323..484 | 100 | -> | Plus |
| arm_X | 11282019..11282210 | 485..679 | 97 | == | Plus |
