UFO01090.5prime Sequence
1218 bp (1048 high quality bases) assembled on 2008-07-03
> UFO01090.5prime
TCTGCGGCCGCATAACATCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGGTCAAACTATTCGCGTTGAGCATCTTTCACAAGGGCGCCAGCGA
GGCGCGTCTCCTGAAGACCGCCTCGGACCTGCAGTCCTTCTCCTTTTTCC
AACGTGGCACCGTCAACGAGTTCATGACTTTCGCTTCGAAGACGATTGTG
GAGCGCACACAGCCGGCCCTGCGGCAATCGGTGAAACAGGATGCCTACAT
GTGTCATGTCTATGTGCGGGCGGACAATCTGGCCGGTGTACTGATCGCCG
ATCATGAGTATCCGCATCGCGTGGCGCACACGCTTATCACAAAGATTCTG
GATGACTTTACGGCCAAGGTGTCGGCCGATCAGTGGCCCAATGGCACGGA
GGCCACTATCTCATTTGACTTGCTGCCAGCGTTTCTAGCACGCTATCAAA
ATCCCGTCGAAGCAGATCCGCTGACGAAAATGCAAAACGACCTGGACGAA
ACGAAGATCATACTGAAGAATACCATCGAGGCGGTGCTGGAGCGGGGCGA
GAAGCTGGACGACATGGTCAGCAAGTCGGAGAAATTGTCGCTGCAGAGCA
AGGCGTTCTACAAGACGGCGAAAAAGACTAACTCCTGCTGCAGCTTCACC
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
GTCGCTTGCGTATATATTTGCCCATGTGAAAACGGGGCGAGAGTGTCATA
TGCCACGTTAATCAAACTGTGAAACTCACCCAGGATTGCTGAACGAAAAC
ATTATCTCATAACCTTAGGAATAGCAGCTTCACGTAACCGCCCCATTCTG
CAATTATTGGTTCAACTGCGGATCGTTTGATTCACCTCCGAAGAGCGAGT
GAACGTTTCAGATTGGGT
UFO01090.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ykt6-RA | 1469 | CG1515-RA | 268..864 | 54..650 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7920890..7921361 | 179..650 | 2360 | 100 | Plus |
| X | 23542271 | X | 7920676..7920800 | 54..178 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:59:46 has no hits.
UFO01090.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-03 13:53:24 Download gff for
UFO01090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0155-RA | 208..812 | 46..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:02 Download gff for
UFO01090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ykt6-RA | 260..864 | 46..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:35 Download gff for
UFO01090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ykt6-RA | 260..864 | 46..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:35 Download gff for
UFO01090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7920668..7920800 | 46..178 | 97 | -> | Plus |
| X | 7920890..7921361 | 179..650 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:02 Download gff for
UFO01090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7814701..7814833 | 46..178 | 97 | -> | Plus |
| arm_X | 7814923..7815394 | 179..650 | 100 | == | Plus |
