UFO01101.5prime Sequence
1137 bp (1003 high quality bases) assembled on 2008-07-09
> UFO01101.5prime
CTGCGGCCGCCTAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGCGCGTCTGCGGCTTCTAATCGGTCTTATATTCTGCCTTGCGATC
AGCTTGGATTCGGTGCTTAGTGCCCCAGTGATCAGCCAGATCAGCAAGGA
CGTGGTGGCCAGTGTGGGCGACTCTGTGGAGTTCAACTGCACCGTGGAGG
AGGTGGGACAGCTCTCGGTGAGCTGGGCCAAGCGTCCCAGCGAGTCGGAC
ACCAACTCGGTGGTGCTCTCCATGCGGAATATCCTCAGTCTGCCCGACCA
GCGGTACAACGTAACGGTCACCGAAGGACCCAAGACCGGAAGTGCCATTT
ACACCTTCCGCATTCAGAACATCGAAGTCAGTGACATGGGTCCGTACGAG
TGTCAGGTGCTTGTTTCGGCCACGGAGAAGGTGACCAAGAAGCTGAGCCT
GCAGATCAAGACCCCGCCGGTGATTGCGGAGAACACCCCCAAGAGCACCC
TGGTGACAGAGGGACAGAATCTGGAGCTGACCTGCCATGCCAATGGCTTT
CCCAAGCCTACGATCTCCTGGGCCCGCGAGCATAATGCAGTGATGCCTGC
CGGTGGCCATTTGCTGGCCGAACCAACTCTCCGGATTCGTTCCGTGCACC
GGATGGATCGCGGCGGCTACTACTGCATCGCGCAGAACGGAGAGGGCCAG
CCGGACAAGAGGTTGATCCGGGTCGAAGTGGAGTTCCGTCCGCAGATTGC
CGTCCAGAGGCCCAAAGATCGCCCAAATGGTGTCCCATTCCGCGGAGCTG
GAGTGCTCCGTGCAGGGCTACCCGGCTCCGACTGTAGTTTGGCACAGAAT
GGCGTGCCCCTGCAGTCTAGCCGGCACCACGAGGTGGCCAACACCGCCTC
CTCCTCGGGGAACCACAACCTCTGTGCTGCGCATCGAATAGCGTTGAGCG
AGGAGGACTTTGGGGGACTACTACCTGCAATGCCACCCAATAAGCTGGGA
ACACGGCCGAAGGCCGCGACTGCCATCTCTTCCCGAAACGTCAATCCCAG
TGTCCCTCCTTGGTCGGCAAGCTTTCTAGAACCATTCGTTGGGCGCCGCG
GGCCCAGGTAAGGTGGTCAATAATCATATATCATAAT
UFO01101.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ama-RC | 1526 | CG2198-RC | 102..1100 | 50..1062 | 4620 | 98 | Plus |
| Ama-RA | 1542 | CG2198-RA | 118..1116 | 50..1062 | 4620 | 98 | Plus |
| Ama-RB | 1833 | CG2198-RB | 409..1407 | 50..1062 | 4620 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6763837..6764781 | 50..1000 | 4345 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:46:40 has no hits.
UFO01101.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:28 Download gff for
UFO01101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RC | 95..1063 | 42..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:19 Download gff for
UFO01101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 407..1372 | 45..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:40 Download gff for
UFO01101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 407..1372 | 45..1023 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:40 Download gff for
UFO01101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6763827..6764800 | 41..1023 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:19 Download gff for
UFO01101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2589549..2590522 | 41..1023 | 98 | | Plus |
