UFO01102.5prime Sequence
1206 bp (1017 high quality bases) assembled on 2008-07-09
> UFO01102.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGGCTACGATGTGAATCGCTTTCAGGGGGAGGTGGACGAGGAGCTCA
CCTGTCCCATCTGCTCCGGAGTGCTTGAGGATCCGCTGCAGGCCGTGATG
TGCGAGCACGCCTTCTGCCGCGGATGCATTAACGAGTGGCTAACCCGCCA
GCCCACTTGTCCGGTGGATCGAAATTCCCTGACTACTGCCAACTTGCGGG
CAGTGCCTCGCATATTGCGCAACCTACTGTCCAGACTGTCAATCACCTGT
GACAATGCGCCTTATGGCTGCACGGCTGTTCTCAAGCTAGACGCCTACAA
TTCCCATTTGGACGAATGCATTCACAATCCGAAGCGACCATTTCCCTGCG
AGAAGGGATGCGGCTTTGACATACCCAAGGATGAGCTAAAGGACCACAAC
TGCGTGCGGGAGCTGCGCACTTTAATTGTCAAGCAGACGGAAAAAATGGG
TGAGCTCAAATCGGAGCTCACCGACCAGCAGCTGACTATCAACGAACTGA
AGCGCGAGCTGCAGCTATTCAAGGACTTTATGCGTGCCATGCGCGTCTCC
AATCCTGCGATGCGGGCCATAGCCGACCAGATGGAGCGCGACGAGGTGAT
CCGCTGGAGCAGCACACTGCCCCGGGCCAGGGTTACGCGCTGGGGGGGAA
TGATCTCTACGCCCGACGATGCACTGCAGCTCATGATCAAGCGCGCTTTG
TCCGAGTCGGGCTGTCCGCCACACATCCTGTATAGTCTTATGGAGTTCTG
CCACGAGCGACGTTTGGCCCCGTGGGCTCAGTTCGCTAGAGACACGTCAA
ACCAATCGTAGGATCTACGACAACTATGTGTGTCGACGCATTCCAGGCAA
GCAAGCTGTGCTCGTTTTGAGCTGCGAAAACCTCCACATGACTGAGGACG
TCATGATCGATCCAGGTTTGGTCATGATTTTCGCCCATGGCATCGAAGGC
AAGCTTTCTAGACCATTCGTTGGCCGCCGGGCCAGGTAGTGTTCATATTC
ATAATCATAATCATAATCATAATCACACTAGCCTAGGAAATCCTGTCATG
ACTATGTCTTGCATTCTCACAATAAAACGCCCGGGCGCAAACGGGACGTT
CTGACATCGAATTGCATCTGAAGTCCTATCTGGAATATCAACGGGAAGTC
CAAAGG
UFO01102.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elgi-RB | 1534 | CG17033-RB | 124..1067 | 52..996 | 4655 | 99.6 | Plus |
elgi-RA | 1611 | CG17033-RA | 201..1144 | 52..996 | 4655 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15957135..15957583 | 281..729 | 2245 | 100 | Plus |
3L | 28110227 | 3L | 15957637..15957805 | 728..897 | 785 | 98.8 | Plus |
3L | 28110227 | 3L | 15956920..15957065 | 139..284 | 730 | 100 | Plus |
3L | 28110227 | 3L | 15957864..15957966 | 894..996 | 485 | 98.1 | Plus |
3L | 28110227 | 3L | 15956750..15956840 | 52..142 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:00:09 has no hits.
UFO01102.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:08 Download gff for
UFO01102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-RA | 201..1150 | 52..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:17 Download gff for
UFO01102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elgi-RA | 201..1150 | 52..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:49 Download gff for
UFO01102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elgi-RA | 201..1150 | 52..1004 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:49 Download gff for
UFO01102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15956750..15956839 | 52..141 | 100 | -> | Plus |
3L | 15956923..15957065 | 142..284 | 100 | -> | Plus |
3L | 15957139..15957583 | 285..729 | 100 | -> | Plus |
3L | 15957639..15957804 | 730..896 | 98 | -> | Plus |
3L | 15957867..15957972 | 897..1004 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:17 Download gff for
UFO01102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15949850..15949939 | 52..141 | 100 | -> | Plus |
arm_3L | 15950023..15950165 | 142..284 | 100 | -> | Plus |
arm_3L | 15950239..15950683 | 285..729 | 100 | -> | Plus |
arm_3L | 15950739..15950904 | 730..896 | 98 | -> | Plus |
arm_3L | 15950967..15951072 | 897..1004 | 94 | | Plus |