UFO01107.5prime Sequence
1247 bp (1015 high quality bases) assembled on 2008-07-09
> UFO01107.5prime
ATCTGCGGCCGCATAACATCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGAGCGGTCGTCCAAGAACTTCCTCCTTCGCCGAGGGCAACAAAC
AGTCGCCGAGTTTGGTGCTGGGCGGCGTCAAAACATGCAGTCGCGATGGT
TCTAAAATCACAACAGTTGTTGCAACACCCGGCCAAGGCACCGATCGCGT
ACAAGAGGTCTCCTATACAGACACAAAGGTCATCGGCAATGGCAGCTTCG
GCGTCGTGTTCCAGGCAAAGCTCTGCGATACCGGCGAACTGGTGGCAATC
AAAAAAGTTTTACAAGACAGACGATTTAAGAATCGCGAATTGCAAATAAT
GCGCAAATTGGAGCATTGTAATATTGTGAAGCTTTTGTACTTTTTCTATT
CGAGTGGTGAAAAGCGTGATGAAGTATTTTTGAATTTAGTCCTCGAATAT
ATACCAGAAACCGTATACAAAGTGGCTCGCCAATATGCCAAAACCAAGCA
AACGATACCAATCAACTTTATTCGGCTCTACATGTATCAACTGTTCAGAA
GTTTGGCCTACATCCACTCGCTGGGCATTTGCCATCGTGATATCAAGCCG
CAGAATCTTCTGCTCGATCCGGAGACGGCTGTGCTGAAGCTCTGTGACTT
TGGCAGCGCCAAACAGCTGCTGCACGGCGAGCCGAATGTATCGTATATCT
GCTCCCGGTATTACCGCGCCCCCGAGCTCATCTTTGGCGCCATCAATTAT
ACAACAAAGATCGATGTCTGGAGTGCCGGTTGCGTTTTGGCCGAACTGCT
GCTGGGCCAGCCCATCTTCCCTGGCGATTCCGGTGTGGATCAGCTCGTCG
AGGTCATCAAGGTCCTGGGCACACCGACAAGAGAACAGATACGCGAAATG
AATCCAAACTACACGGAATTTCAAGTTCCCTCAGATTAAGGAGTCATCCA
TGGCAAGAAAGTTTTCCGTTATACCCACTCCTACAGAAGCTATCAACTGG
TGTCCCTGCTGCTCGAGTAAACGCCCAGGTGCCAGATCCCACCGGCTCAA
AGGCCTGGCGCCACATCGGTCTTCGAATGGAGCTACGCCAATGGGAGGGT
AATCACACCTTGCCAAACGGATCGCGAATTTGCCGCGCGCGTGTTCACTG
CAAGAAGAATGAACCTCTCAATATACGCAAGCTATCCGGAATGTGCTAAG
CAACTGCCAAAAGCGCAATCGGGATCTGTGACGGCAAATACGAGCAC
UFO01107.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RC | 3110 | CG2621-RC | 549..1626 | 55..1147 | 4875 | 97.5 | Plus |
| sgg-RF | 4244 | CG2621-RF | 647..1724 | 55..1147 | 4875 | 97.5 | Plus |
| sgg-RE | 3055 | CG2621-RE | 494..1571 | 55..1147 | 4875 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2671307..2671545 | 525..763 | 1195 | 100 | Plus |
| X | 23542271 | X | 2669913..2670103 | 140..330 | 955 | 100 | Plus |
| X | 23542271 | X | 2671628..2671818 | 763..955 | 865 | 99 | Plus |
| X | 23542271 | X | 2671119..2671231 | 413..525 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 31373036..31373316 | 592..872 | 490 | 78.3 | Plus |
| X | 23542271 | X | 2642009..2642095 | 55..141 | 435 | 100 | Plus |
| X | 23542271 | X | 2670172..2670257 | 329..414 | 430 | 100 | Plus |
| X | 23542271 | X | 2672922..2672981 | 970..1028 | 220 | 95 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:43 has no hits.
UFO01107.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:09 Download gff for
UFO01107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RJ | 938..1908 | 55..1028 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:01 Download gff for
UFO01107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RE | 494..1464 | 55..1028 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:10 Download gff for
UFO01107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RE | 494..1464 | 55..1028 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:10 Download gff for
UFO01107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2670174..2670257 | 331..414 | 100 | -> | Plus |
| X | 2642009..2642093 | 55..139 | 100 | -> | Plus |
| X | 2669913..2670103 | 140..330 | 100 | -> | Plus |
| X | 2671121..2671231 | 415..525 | 100 | -> | Plus |
| X | 2671308..2671545 | 526..763 | 100 | -> | Plus |
| X | 2671629..2671822 | 764..960 | 98 | -> | Plus |
| X | 2672914..2672981 | 961..1028 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:01 Download gff for
UFO01107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2536042..2536126 | 55..139 | 100 | -> | Plus |
| arm_X | 2563946..2564136 | 140..330 | 100 | -> | Plus |
| arm_X | 2564207..2564290 | 331..414 | 100 | -> | Plus |
| arm_X | 2565154..2565264 | 415..525 | 100 | -> | Plus |
| arm_X | 2565341..2565578 | 526..763 | 100 | -> | Plus |
| arm_X | 2565662..2565855 | 764..960 | 98 | -> | Plus |
| arm_X | 2566947..2567014 | 961..1028 | 94 | == | Plus |
