UFO01108.5prime Sequence
1199 bp (1046 high quality bases) assembled on 2008-07-09
> UFO01108.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGCCAAAACCTACGACTATCTGTTCAAACTGCTCCTGATCGGTGACT
CCGGAGTGGGCAAGACCTGCATCCTCTTCCGATTCTCTGAGGACGCCTTC
AACACAACGTTTATATCCACAATAGGTATCGATTTTAAAATTAGAACAAT
TGAATTAGATAACAAGAAGATTAAGCTGCAGATATGGGACACTGCCGGCC
AGGAGCGTTTTCGCACAATCACCACGGCCTATTACAGAGGTGCCATGGGC
ATCATGCTGGTATATGACATAACCCAAGAAAAGTCCTTCGAGAACATCAA
AAACTGGATCAGGAATATCGAGGAAAATGCGTCCGCCGATGTCGAGAAAA
TGCTGCTGGGAAACAAGTGCGAATTGACCGATAAGCGACAGGTTTCAAAA
GAGCGCGGCGAACAATTGGCCATCGAGTATGGCATCAAGTTCATGGAGAC
CTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCTTCCTCACCCTAGCCA
GTGATATCAAAGCGAAAACGGAAAAGCGAATGGAGGCGAACAACCCACCC
AAGGGCGGCCATCAGCTGAAACCGATGGACAGTCGGACGAAGGACAGTTG
GTTGTCCAGGTGCAGTCTGCTTGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGCAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACTTGTCGCCTTGCGTATAATATTTGCCCATG
ATGAAAACGGGGCGAAGAGTTGTCATATTGCCACGTTATCAAACTGATGA
CTCACCAGGATGCTGAAACGAAAACTATTCTCAATAACCTTAGAATAGCC
AGTTTCACGTAACGCCAATCTTGCAAATAATGTGTGTGAAACTTGCCGG
UFO01108.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-RC | 2043 | CG8287-RC | 575..1195 | 52..672 | 3105 | 100 | Plus |
Rab8-RA | 2263 | CG8287-RA | 575..1195 | 52..672 | 3105 | 100 | Plus |
Rab8-RB | 1068 | CG8287-RB | 50..548 | 174..672 | 2495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19869101..19869308 | 443..236 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 19868723..19868866 | 583..440 | 720 | 100 | Minus |
3L | 28110227 | 3L | 19870379..19870504 | 177..52 | 630 | 100 | Minus |
3L | 28110227 | 3L | 19868556..19868646 | 672..582 | 455 | 100 | Minus |
3L | 28110227 | 3L | 19869367..19869430 | 237..174 | 320 | 100 | Minus |
X | 23542271 | X | 20252275..20252409 | 213..347 | 315 | 82.2 | Plus |
X | 23542271 | X | 20251640..20251759 | 58..177 | 225 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:52:18 has no hits.
UFO01108.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:29 Download gff for
UFO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 546..1174 | 44..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:19 Download gff for
UFO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 567..1195 | 44..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:38 Download gff for
UFO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 567..1195 | 44..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:38 Download gff for
UFO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19868556..19868645 | 583..672 | 100 | <- | Minus |
3L | 19868724..19868864 | 442..582 | 100 | <- | Minus |
3L | 19869103..19869307 | 237..441 | 100 | <- | Minus |
3L | 19869368..19869428 | 176..236 | 100 | <- | Minus |
3L | 19870381..19870510 | 44..175 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:19 Download gff for
UFO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19861656..19861745 | 583..672 | 100 | <- | Minus |
arm_3L | 19861824..19861964 | 442..582 | 100 | <- | Minus |
arm_3L | 19862203..19862407 | 237..441 | 100 | <- | Minus |
arm_3L | 19862468..19862528 | 176..236 | 100 | <- | Minus |
arm_3L | 19863481..19863610 | 44..175 | 96 | | Minus |