Clone UFO01108 Report

Search the DGRC for UFO01108

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:11
Well:8
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptRab8-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01108.5prime Sequence

1199 bp (1046 high quality bases) assembled on 2008-07-09

> UFO01108.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGCCAAAACCTACGACTATCTGTTCAAACTGCTCCTGATCGGTGACT
CCGGAGTGGGCAAGACCTGCATCCTCTTCCGATTCTCTGAGGACGCCTTC
AACACAACGTTTATATCCACAATAGGTATCGATTTTAAAATTAGAACAAT
TGAATTAGATAACAAGAAGATTAAGCTGCAGATATGGGACACTGCCGGCC
AGGAGCGTTTTCGCACAATCACCACGGCCTATTACAGAGGTGCCATGGGC
ATCATGCTGGTATATGACATAACCCAAGAAAAGTCCTTCGAGAACATCAA
AAACTGGATCAGGAATATCGAGGAAAATGCGTCCGCCGATGTCGAGAAAA
TGCTGCTGGGAAACAAGTGCGAATTGACCGATAAGCGACAGGTTTCAAAA
GAGCGCGGCGAACAATTGGCCATCGAGTATGGCATCAAGTTCATGGAGAC
CTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCTTCCTCACCCTAGCCA
GTGATATCAAAGCGAAAACGGAAAAGCGAATGGAGGCGAACAACCCACCC
AAGGGCGGCCATCAGCTGAAACCGATGGACAGTCGGACGAAGGACAGTTG
GTTGTCCAGGTGCAGTCTGCTTGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGCAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACTTGTCGCCTTGCGTATAATATTTGCCCATG
ATGAAAACGGGGCGAAGAGTTGTCATATTGCCACGTTATCAAACTGATGA
CTCACCAGGATGCTGAAACGAAAACTATTCTCAATAACCTTAGAATAGCC
AGTTTCACGTAACGCCAATCTTGCAAATAATGTGTGTGAAACTTGCCGG

UFO01108.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-RC 2043 CG8287-RC 575..1195 52..672 3105 100 Plus
Rab8-RA 2263 CG8287-RA 575..1195 52..672 3105 100 Plus
Rab8-RB 1068 CG8287-RB 50..548 174..672 2495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19869101..19869308 443..236 1040 100 Minus
3L 28110227 3L 19868723..19868866 583..440 720 100 Minus
3L 28110227 3L 19870379..19870504 177..52 630 100 Minus
3L 28110227 3L 19868556..19868646 672..582 455 100 Minus
3L 28110227 3L 19869367..19869430 237..174 320 100 Minus
X 23542271 X 20252275..20252409 213..347 315 82.2 Plus
X 23542271 X 20251640..20251759 58..177 225 79.2 Plus
Blast to na_te.dros performed on 2014-11-28 18:52:18 has no hits.

UFO01108.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:29 Download gff for UFO01108.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 546..1174 44..672 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:19 Download gff for UFO01108.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 567..1195 44..672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:38 Download gff for UFO01108.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 567..1195 44..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:38 Download gff for UFO01108.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19868556..19868645 583..672 100 <- Minus
3L 19868724..19868864 442..582 100 <- Minus
3L 19869103..19869307 237..441 100 <- Minus
3L 19869368..19869428 176..236 100 <- Minus
3L 19870381..19870510 44..175 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:19 Download gff for UFO01108.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19861656..19861745 583..672 100 <- Minus
arm_3L 19861824..19861964 442..582 100 <- Minus
arm_3L 19862203..19862407 237..441 100 <- Minus
arm_3L 19862468..19862528 176..236 100 <- Minus
arm_3L 19863481..19863610 44..175 96   Minus