UFO01109.5prime Sequence
1217 bp (972 high quality bases) assembled on 2008-07-09
> UFO01109.5prime
TCTGCGGCCGCATAACATCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGAGCTTTATTGACCAGGAAGTCACGGAGTTCCGAGCAAAATGTGA
GAAGCAGGTGCCGCACACGAAGATCATTATTTGCTCCAACTCGCTGATCC
GGGTTGACATATACCCGGAGCGGCCGAATCGCTCGATGACTATGTGCCTT
CGATTTCCAGAAAACTACCCGCAGAGCACCCAAATTCTGGTGGAGCTGAA
GAGTCGTGTGTACTCCGAAATGCTTCTGACGGAGCTTACCCGGCTGATCG
ACGACTATGCCAGGGATTTCATCGGGAAGCCACAGGCATTGCAAGTGCTG
GCCTTCGCCCAACAGTATTTAACTGATAATCCGCTGTGCGTGTGCTTGGA
GGAGATCAAGCAGCTGAGAGCGGACATCAAGACTGGAGGCACGGAGAGCC
AGTTGAAGCTGAAGCAGAAGAACAAAAGCGTGGAGCTGGTCGCCAAGGGC
GGACGCTACACCTACAGAGTAATCGCTGTTGTTCCGGACAGCTATCCCAT
GCAGAGTGTGGAGCTGCGCGGTCAAGATTCCAATCTCCCAGCCGTGCTCG
TGCGTTACCTAAACGGCCAGTCAAAAGGAAATAGCCCGGCAGTGCGTGGA
GCCACCGATCCGTATGAGCAAGGAGGCTCTAGCCAATTTTCGGCCTGTTA
GGAGTCTGCAACGCTCGCTGAAATTCTGCCTGGAAGCCACCCGGGACTTT
CACACCGAGCGTTGTCCCATATGTGATAGTACCGTGCTACCCGAATACCC
AGAGGACATAGAAACGGATGACATGCCGACTTCTTCATCGAGCGCGTCTA
CTGTGTTCATCTCTTTCACCAAAGCTGCCTTAAGAAATACCTATCGGAGC
CTCCGTTTCCAAGGGTGCAATTATGTCCCGCCGCGCGTCGCCATCCTCGT
TCCGATGCCCAGACCTATATGGGCAAGTCACAAGGAGGAGGAGCCACCGC
TTCCAAACTCCGGAGGACCACTGTGTGGCGCATCAGCTGGCTCACGATCG
TGGGGTGGTCCAGCGTAAGAACCGCAAAGGCGCGCTGGTCCAAAAACTGC
TCGCCAAAGAAACTGGAGGAGTGATCAACTCCTGCAGCAAGCTTCTAGAC
CATTCTGGCCCGGCAGGTAGGCCTAAATCTATCTAACTATAGCCTATATA
CCAACCTGACCGCCTAG
UFO01109.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17260-RB | 1288 | CG17260-RB | 89..1162 | 54..1121 | 4860 | 97.5 | Plus |
| CG17260-RC | 1306 | CG17260-RC | 107..1180 | 54..1121 | 4860 | 97.5 | Plus |
| CG17260-RA | 1383 | CG17260-RA | 184..1257 | 54..1121 | 4860 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3037594..3038631 | 54..1088 | 4595 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:48:23 has no hits.
UFO01109.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:10 Download gff for
UFO01109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17260-RA | 178..1267 | 45..1130 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:52 Download gff for
UFO01109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17260-RA | 178..1267 | 45..1130 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:33 Download gff for
UFO01109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17260-RA | 178..1267 | 45..1130 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:33 Download gff for
UFO01109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3037588..3038677 | 45..1130 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:52 Download gff for
UFO01109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3037588..3038677 | 45..1130 | 96 | | Plus |
