UFO01110.5prime Sequence
1221 bp (1059 high quality bases) assembled on 2008-07-09
> UFO01110.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGCACGTGTACTACAAGTTTGGATTACTGCTGATATTTTTGCTAA
GCGTGAGCATCAGCCACACAAATGCCGCTCCAGCGGGCAGTGAGGAGGCA
AATCCCCTCGAGGACTTTAATTACGGCGATGATGACTACAGTGAAACAGC
GACGGGCGAGGAATCGCCGGAGACAGCAGAAAATAGACTGATGCCACAAT
CATCCTCCACATCGACCACCACCACATTTCGACCAATATTTAATATACCA
CGACGCAGCAACCATGTCCTGGAGCCCAGTTGCCCGCGCAACTGCCTCTG
CCTGGAGGACTTCAAGTTCGTTCAGTGTGCCAATGCCCATTTGACCCATG
TACCCCTGGACATGCCCAAAACGGCGGCCATCATCGATCTGAGCCATAAT
GTGATTGCCGAACTGAGGCCGGAGGATTTTGCCAATCTGTCCAGGGCGGT
GGAAATCAATTTGAATCACAATCTGATCAGCAGCATAGACAAGGATGTCT
TTCAGGGATCGGAGCGTTTGAAGCGCCTGCGGCTGGCCAACAACCGTCTA
ACCAAAATCGATCCCGACACCTTTGCGGCGGCCAAGGAACTAACGCTACT
CGATTTGAGCAACAACACCATAACCCAGCGCCTGGACGGATCCTTCTTGA
ACCAGCCCGACTTGGTGGAGTTCAGCTGCGTCAACTGCAGCTGGACGGAA
CTGCCGGAACAGACGTTCCAGAACATGAGTGGCCTGGAGGTGTTGCGCTT
GAACAAGAACGATTTTAAACAGCAAATCAATACGAAAGCTTTCTCGCCGC
TAACAAAATAATTAAACTGAGGCTGCCGGAACTGGAACAACAGAACATCG
AGGAGCTGTGCAGCCTGCTGACCTCCATCGACACGATTAGCTTCCTCAAC
TACGACATCAGCTGCTACGAATTCGTACTGGGCACCCCCTTCACGGCAGT
CTCATCTATCCCACGGAGCCGCCGCTCAAGGGGATTACAAATCGCCCATC
GTCGCAGCATCACAGCCTGCAAGCCAGGTGACGCACACGTACGCTAGAAG
TGCAATCGCATCGGGGCAAATGAACACAGCACGGACTGGTCAAGCCGGGA
ATCTGACTCGAACAGGCCATGCGGAATCAGCGTGAAGCGCTGGCCGAAGA
TCAGAACACTACTCAGGTGGT
UFO01110.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42709-RC | 2053 | CG42709-RC | 205..1360 | 55..1188 | 5020 | 96.9 | Plus |
| CG42709-RA | 2186 | CG42709-RA | 338..1493 | 55..1188 | 5020 | 96.9 | Plus |
| CG42709-RB | 2212 | CG42709-RB | 364..1519 | 55..1188 | 5020 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12794381..12794656 | 547..822 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 12794062..12794317 | 293..548 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 12794793..12795032 | 819..1055 | 1035 | 98.3 | Plus |
| 3L | 28110227 | 3L | 12793814..12794000 | 106..292 | 935 | 100 | Plus |
| 3L | 28110227 | 3L | 12791581..12791633 | 55..107 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:27 has no hits.
UFO01110.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:04 Download gff for
UFO01110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17667-RB | 716..1755 | 55..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:39 Download gff for
UFO01110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42709-RB | 364..1403 | 55..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:33 Download gff for
UFO01110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42709-RB | 364..1403 | 55..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:33 Download gff for
UFO01110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12794381..12794656 | 547..822 | 100 | -> | Plus |
| 3L | 12794797..12795068 | 823..1088 | 95 | | Plus |
| 3L | 12791581..12791633 | 55..107 | 100 | -> | Plus |
| 3L | 12793816..12794000 | 108..292 | 100 | -> | Plus |
| 3L | 12794062..12794315 | 293..546 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:39 Download gff for
UFO01110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12787481..12787756 | 547..822 | 100 | -> | Plus |
| arm_3L | 12787897..12788168 | 823..1088 | 95 | | Plus |
| arm_3L | 12784681..12784733 | 55..107 | 100 | -> | Plus |
| arm_3L | 12786916..12787100 | 108..292 | 100 | -> | Plus |
| arm_3L | 12787162..12787415 | 293..546 | 100 | -> | Plus |
