UFO01111.5prime Sequence
1232 bp (1039 high quality bases) assembled on 2008-07-09
> UFO01111.5prime
AGATCTGCGGCCGCATAACATCGTATAGCATACATTATACGAAGTTATCA
GTCGACATGCCTAACGACACTGTGGTAAAGGTGCAGGAGTACAAGGACTC
GTTGATCCTCAAGGCAGAGCTGCTAATCACCAAGGGGTTCCCGGAGAATA
TCGTCCGGCTGAACGAGCTGCTGGCCACGCCGATCTTCAACGAGCGCAAC
TTCGAAGAAGTGCACCAGGACCTCAACATCCCGGTCCTGCCGCCTCTCCT
GGTTAAAAACGAGTTGGAGGATCGTGACAGTCTGCCCACCAAGCGCCAGC
GCGTGGATGTCATCGTCTCTGGGCAGCCTGTCATGGGTCTGCCCGCCGGT
ACAGTGCCGTGCAACAAGCCGCTCTGCGAGATGATCAAGGTCGTCAAGCC
TATCATCAGGAAGCTTGTGGAGGATTCCAATCTACTTAAGATGTGGATCT
CCTTTATGATACCCAAGATCGAGGATGGCAACAACTTTGGCGTCTCCATT
CAAGAGGACACGCTTGCCGAAATTCAAACTGTGGAATCCGAGGCGGCCGC
CTTCTTTGACCAGATATCGCGCTATTTCTTGTCGCGCGCCAAGGTGGTGT
CCAAGGTGGCCAAGTATCCGCACATCGATGATTATCGGCGCGCAGTCGTC
GAACTTGACGAGAAGGAGTACCTCAGCTTGTGGCTGGTCGTTTGTGAGGT
CCGCAATCGCTACTCCTCGCTGCACGACATTGTTATTAAGAACCTCGAGA
AGCTAAAGAAGCCGCGCTCCTCAAATACCGAAAGCCTGTATGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCAACAATAAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAATCCAGAATGGAGTTCTGAGTCATTACTGGAATCTATCAACA
GGAGTCCAAGCGAGCCTCGATATCAAATTACGCCCCCGCCTTGCCACTTC
ATCGCAGTACTGTTGTAATTCATTTAGCATTCTGCCGACAGCAGGCCATC
ACAAACCGCATGATGAACCTGAATCGGCAGCGGCATCGTCACCTTGTCGC
TTGCTATTATTATTGGCATGGTGAACGGGCTAAGAAAGGTGTCCATTTGC
CGCTGGTTAAAATAAAAACCTGGTGTGCGAAC
UFO01111.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| REG-RB | 1830 | CG1591-RB | 204..942 | 53..791 | 3680 | 99.9 | Plus |
| REG-RA | 1370 | CG1591-RA | 177..915 | 53..791 | 3680 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13212585..13212958 | 53..426 | 1855 | 99.7 | Plus |
| X | 23542271 | X | 13213156..13213520 | 427..791 | 1825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:40 has no hits.
UFO01111.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:26 Download gff for
UFO01111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| REG-RA | 182..926 | 53..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:23 Download gff for
UFO01111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| REG-RA | 177..921 | 53..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:31 Download gff for
UFO01111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| REG-RA | 177..921 | 53..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:31 Download gff for
UFO01111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13212585..13212958 | 53..426 | 99 | -> | Plus |
| X | 13213156..13213526 | 427..798 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:23 Download gff for
UFO01111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13106618..13106991 | 53..426 | 99 | -> | Plus |
| arm_X | 13107189..13107559 | 427..798 | 99 | == | Plus |
