UFO01112.5prime Sequence
938 bp (687 high quality bases) assembled on 2008-07-09
> UFO01112.5prime
GCGGCCGTTAAACATCATATAGCATACATTATACGAAGTTATCAGTCGAC
TTGGCCACCTCATCGATACTCGCCAAAAGCACAATTAATAGCACATCGCC
ACCGGCCACGCCCAGCAGCAGCGCGTCCCCCGGCTCCACACTGACCACCC
GGAAGCGGACCTACGAGATAGCCATTGCCATGCCCTCGTCCACCGCCTCC
AGCAGCGCCACAAAGGTATCGGAAGTTCAGGATCAGCGCACAAACAGCCC
CGGCAAGTCCAAGAGCAGGCCCGGCCAGCTGGAGAGTGTCTTGGTGGTCG
GCGAGGGAGCCAGCGAGCCCACCACCTCGGCCACCACACTGCGGGACAGC
ACACGCACCATCTCACAAAGCGACGCCGACGATGGCGGTGAAGCGGCAGC
CGCCGAGGACCTGCTGCCCCCACAGTCGGATTACCTCAACGGCGTCAAGC
GGAAGTACGTCCCGCAGCAGCAGGCGTCGCCGAATCACCGGGTGGTGCCC
GCATCCACCTCGCAGCAATTCTTCAGCGGGGCCTCCGATTTTGCGACAAT
TTGCAAGCCGGCGCCCTACTCTCACGACGAGGAGGCCATGCTGGAGCGGG
ATAAGATGTGACTACGCTCAAAGGATCACCTACTAGATGGCCCGCTCCGG
ACAGACGACCCCGCAGGGTGAGGGTCTACGTCCGATGGCATCTACGATCT
TTTTCCACCAGGGCCACGCCCGCCAACTAATGTAGGCCCAGAAACATCTA
TCCCACGTGTACTTATTTGTGGGCGTGTGCACGACGAGCTCACCCACCGC
ATGAAGGGACGCACCGTGATGAACGTTTCAAGCGATACAAGGGAGTGCGT
CACCTGCCGCTATGTGGACAACATCGCCAAAACGCCCCATGGATTCTGTC
CGATGATTTCATTTGCCTAACACAAAAATCGATTTTGT
UFO01112.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cct1-RF | 2754 | CG1049-RF | 297..1179 | 52..938 | 3825 | 96.2 | Plus |
| Cct1-RE | 2564 | CG1049-RE | 375..1257 | 52..938 | 3825 | 96.2 | Plus |
| Cct1-RC | 2302 | CG1049-RC | 113..995 | 52..938 | 3825 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1550795..1551288 | 52..545 | 2455 | 99.8 | Plus |
| 3L | 28110227 | 3L | 1551477..1551798 | 545..869 | 1055 | 94.5 | Plus |
| 3L | 28110227 | 3L | 1554081..1554352 | 549..823 | 215 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:34:08 has no hits.
UFO01112.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:06 Download gff for
UFO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct1-RB | 215..1084 | 47..922 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:27 Download gff for
UFO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct1-RB | 215..1084 | 47..922 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:37 Download gff for
UFO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct1-RC | 110..979 | 47..922 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:37 Download gff for
UFO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1550792..1551288 | 47..545 | 99 | -> | Plus |
| 3L | 1551478..1551801 | 546..872 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:27 Download gff for
UFO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1550792..1551288 | 47..545 | 99 | -> | Plus |
| arm_3L | 1551478..1551801 | 546..872 | 93 | -> | Plus |
