UFO01113.5prime Sequence
1217 bp (1046 high quality bases) assembled on 2008-07-09
> UFO01113.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGTCCCACCACAGCGATGATCAGCTCCTCCAGGCTGGAAGCGATTCCT
TCTGGGAGCCCGGCAACTACAAACGCACCACCAAGCGGATCGAGGATGGT
TACAAACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTGCCGACAT
CGAGAAGGGATATGCGAAAAGCCTGCGCACCTGGTCAAAGAAATGGGGTG
AACTCATTGAGAAAGGCCCGGAATACGGAACCACGGAGGCAGCCTGGAAG
GGCGTTCTGACGGAATCGGAACGCATCTCCGACGTTCACATGAAGATCAA
GGACAATCTCTGCAACGATGTGAACAGCCAGATAAAGACGTGGCAGAAGG
AGAACTACCACCACACGCTTATGCAGATCAAGGAGCGCAAGGACCTGGAG
GATCTGTTCAAGAAGGCCCAGAAACCCTGGGCCAAGCTGCTGGCAAAGGT
CGAGAAGGCCAAAGCGGACTACCATTCGGCCTGCAAGACGGAGCGCAGTG
CTACCAATCAGGAACGCAATGCCAATGCCGATAGCTCGTTGTCGCCGGAT
CAGGTGAAGAAAATGCACGATCGAGTGCAAAAGACCAAAGATCAAGTGCA
AAAGTGCCGGGAAAAGTACGAGCAGGCGATTGCCGAAATCACCAAATACA
ATTCGGTGTACATCGAGGACATGACATCCGTGTTTGAAAAGTGCCAAACC
TTTGAGAAGACGCGTTTGCAGTTCTTCAAAGAAATCCTGTTCAACGTGCA
CTCGTGCCTGGACCTCACAAAAGTGCAAAGCCTGCCCCAAATCTACGAGG
AGTTCTCCCACACGATCAACAATGCAGACCAGCAGAAAGACCTAAAATGG
TGGTCGAACAATCATGGCATTAACATGGGCCATGAATTGGCCCATCATTT
GTGGAATATACGGAGGAGTTCCGTGACATTGCCCAAGGGCAACAAAATCA
AAAGAGGCACTGCCCGGCAGCACCCATCACGCTCATCACCCAGCGACTGG
TGGACGAGATGTGCACGAATACCCCAGAACAAACAGGCTGAAGAAGAACT
CTAGCACTGAGCAGGTCAGCAGCTGGCGAGTGGAAGAGCGAAATAGGAAC
AGGCAATCTAGTCACCAATTCGGAGCCAAAACTTCGCGCGGCGTTGCGGG
GCCTGTGCCAACGGAAC
UFO01113.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Synd-RB | 2022 | CG33094-RB | 79..1224 | 52..1193 | 5130 | 97.3 | Plus |
| Synd-RD | 2287 | CG33094-RD | 79..1227 | 52..1193 | 5090 | 97.1 | Plus |
| Synd-RC | 2281 | CG33094-RC | 73..1221 | 52..1193 | 5090 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20837583..20837924 | 264..605 | 1710 | 100 | Plus |
| 3R | 32079331 | 3R | 20838033..20838261 | 602..830 | 1145 | 100 | Plus |
| 3R | 32079331 | 3R | 20835875..20835985 | 156..266 | 555 | 100 | Plus |
| 3R | 32079331 | 3R | 20838323..20838446 | 829..954 | 530 | 98.4 | Plus |
| 3R | 32079331 | 3R | 20835228..20835331 | 52..155 | 520 | 100 | Plus |
| 3R | 32079331 | 3R | 20838512..20838614 | 953..1058 | 320 | 93.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:16 has no hits.
UFO01113.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:32 Download gff for
UFO01113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Synd-RB | 83..1212 | 39..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:22 Download gff for
UFO01113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Synd-RB | 69..1198 | 39..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:50 Download gff for
UFO01113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Synd-RB | 69..1198 | 39..1167 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:50 Download gff for
UFO01113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20835222..20835331 | 44..155 | 97 | -> | Plus |
| 3R | 20835875..20835984 | 156..265 | 100 | -> | Plus |
| 3R | 20837585..20837922 | 266..603 | 100 | -> | Plus |
| 3R | 20838035..20838261 | 604..830 | 100 | -> | Plus |
| 3R | 20838325..20838445 | 831..953 | 98 | -> | Plus |
| 3R | 20838513..20838623 | 954..1066 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:22 Download gff for
UFO01113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16660944..16661053 | 44..155 | 97 | -> | Plus |
| arm_3R | 16661597..16661706 | 156..265 | 100 | -> | Plus |
| arm_3R | 16663307..16663644 | 266..603 | 100 | -> | Plus |
| arm_3R | 16663757..16663983 | 604..830 | 100 | -> | Plus |
| arm_3R | 16664047..16664167 | 831..953 | 98 | -> | Plus |
| arm_3R | 16664235..16664345 | 954..1066 | 93 | -> | Plus |
