UFO01114.5prime Sequence
1222 bp (1050 high quality bases) assembled on 2008-07-09
> UFO01114.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGTCGGTGGAATCCTCCAGTTCGGCGGTCCAACAGCCGCCGTCGTCCT
CGAACCTACCGCTCCTGGGCGACAACCAGGCGGTGGCCACGACCAGCTCC
GCCTCCTCGGCCTCTTCCTCTTCCACATCGTCGTCCTCCTCGTCGGTGGG
CGGCGGCAATGTGGTGGGCGTGCCGCTGGACACGCAGGGCAGCGGAGAAC
CGCCGGCCAAGAAACAGTTGTTGGACGGAGGGGGCGGTGGTGCCACCAGC
AGCAGCGGCAGCAGCTTGCTTTCCAGTGCCGCAGCCGCCTCGGGAATGCA
CGAAAAGCTGGCCCACCGCATCTCCAATGCCCTGTGCTGTGCCGTCTGCC
TGGATTTGCCCAAGACGGCCATGTACCAGTGCCAGATGGGCCATCTGATG
TGCGCCGCCTGTTTCACGCATCTGCTGGCGGATGGACGCTTGCGCGATCA
GATTGCCACGTGCCCCAATTGCCGCGTGGAAATTTCTAAGAGCACTGCGT
CGCGCAACTTGGCCGTGGAGAAGGCCGCCTCAGAATTGCCCAGCGAGTGT
CAATTCTGCAACAAGGAGTTCCCATACAAATCTCTCGAACGCCATGAACA
ACACGAGTGCCAGGAGCGCCCGACCAAGTGCAAATACCATCGCATTGGCT
GTCAGTGGCGGGGACCCTACCACGAGACCAACGAGCATGAGCGCAACTGC
TTGCATCCCCAGAAGTCTGGCTACGAGGTAATGGCAGCCCTGGAGGCCCA
CGACGATAGGATCAAGGAGGAGAAGAAGATGTTTAACACCCTGATTGACT
TGCTTAGCTACGAGAAGATCATATTCAATGACCTCCAAATGAAACCCTAC
CGCACAGACGAGTACGTGCACAAGCTCTTGTATGAGACGGCCCGCTTCTC
GGCCTTCAATCAACAGTGGGTGGTGAAGGCGCGCATCAACAACAGCCAGC
GCGATCCGCATCAGTCCACGAGCGGACATCACTATCAGCTGATCTCAGGA
CAAGACAGCACGCCCATGAGCATACATTTCTTTGCGCTGAGGTCGTTCTC
GGGATATGAAGTTCCACGCAGATTAACAACATGATCCACCGAGAACGAGT
ACGCGCAGACAATGGTCTGGCATTGCCAACTGGCATTCGGCGGTTACGGG
TCGAGGTTAATTGCGACACTCG
UFO01114.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32486-RD | 2356 | CG32486-RD | 300..1412 | 51..1152 | 5135 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3070162..3070540 | 429..51 | 1895 | 100 | Minus |
| 3L | 28110227 | 3L | 3057430..3057582 | 880..728 | 765 | 100 | Minus |
| 3L | 28110227 | 3L | 3057055..3057271 | 1090..880 | 755 | 96.3 | Minus |
| 3L | 28110227 | 3L | 3057641..3057764 | 727..604 | 620 | 100 | Minus |
| 3L | 28110227 | 3L | 3057829..3057944 | 603..488 | 580 | 100 | Minus |
| 3L | 28110227 | 3L | 3058066..3058127 | 488..427 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:50 has no hits.
UFO01114.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:34 Download gff for
UFO01114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32486-RD | 296..1405 | 44..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:27 Download gff for
UFO01114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32486-RD | 296..1405 | 44..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:37 Download gff for
UFO01114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32486-RD | 296..1405 | 44..1144 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:37 Download gff for
UFO01114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3057829..3057943 | 489..603 | 100 | <- | Minus |
| 3L | 3058066..3058124 | 430..488 | 100 | <- | Minus |
| 3L | 3057055..3057270 | 881..1090 | 96 | <- | Minus |
| 3L | 3057430..3057582 | 728..880 | 100 | <- | Minus |
| 3L | 3057641..3057764 | 604..727 | 100 | <- | Minus |
| 3L | 3070162..3070544 | 44..429 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:27 Download gff for
UFO01114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3057055..3057270 | 881..1090 | 96 | <- | Minus |
| arm_3L | 3057430..3057582 | 728..880 | 100 | <- | Minus |
| arm_3L | 3057641..3057764 | 604..727 | 100 | <- | Minus |
| arm_3L | 3057829..3057943 | 489..603 | 100 | <- | Minus |
| arm_3L | 3058066..3058124 | 430..488 | 100 | <- | Minus |
| arm_3L | 3070162..3070544 | 44..429 | 98 | | Minus |
