UFO01115.5prime Sequence
1258 bp (935 high quality bases) assembled on 2008-07-09
> UFO01115.5prime
GCGGCCGCATAACAACGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGTCGGAAATGCAGATGGACTGTGCTTTGGATCTGATGCGGAGGCTGCC
GCCCCAGCAGATCGAGAAGAACCTTATTGATCTGATAGACTTGGCACCGG
ATCTCTGCGAGGACTTGCTCTCCTCCGTGGACCAGCCGCTGAAGATCGCC
AAGGACAAGGAGCACGGCAAGGACTATCTGCTGTGCGACTATAACCGGGA
TGGGGACTCCTACAGATCGCCCTGGTCGAACTCCTACTATCCGCCGCTGG
AGGATGGCCAAATGCCCTCGGAACGACTGCGCAAACTGGAAATCGAGGCG
AACTATGCCTTCGATCAGTACAGGGAGATGTACTACGAGGGAGGCGTCTC
CTCCGTCTACCTATGGGATCTGGATCACGGGTTTGCCGCCGTTATACTGA
TCAAAAAGGCGGGAGATGGCAGCAAGATGATCCGCGGCTGCTGGGACTCC
ATCCATGTGGTCGAGGTACAGGAGAAGACCACCGGCAGGACGGCCCACTA
CAAGCTCACCTCCACGGCAATGCTCTGGCTGCAGACCAACAAACAGGGTT
CGGGAACCATGAATCTGGGCGGATCCCTCACCCGGCAGCAGGAGCAGGAC
GCCAACGTCAGCGAGTCGTCGCCGCACATCGCCAACATTGGCAAGATGGT
CGAGGAGATGGAGAACAAGATCAGGAACACCCTGAACGAGATCTACTTTG
GCAAGACCAAGGACATCGTGAACGGACTAAGGAGCACACAATCACTGGCC
GATCAGCGCCAGCAGCGGCCATGAAGCAGGACCTCGCAGCGGCCATCCTG
CGACGCAATGTCAAGCCCGAATCGAACGCAAGCTTTCTAGATCATTCGTT
TGGCGCGCGGGCCCAGGTAGTGGTCATAATCATAATCAAATCATAATCAT
AATCACAACTAGCTAGAGAATCCTGGTCATGACTAGTGCTTGATTCTCAC
AATAAAAACCGCCCCGGCGGGCAACCGAGCGTTCTGACCAATTCCAGATG
GAGTTCTGAGGTCATTACTGATCTATCACAGGATTCAAGCGAGCTCGAAA
TCATTACGCCCCGCCTTGCCACTCTATCCGAGTTACTGGTTGAAATCATT
AGCATTCTGCCCAAACTGGACCATCACAACGGCATGTGTTAAACCTTGAT
CGCCAGGCGATCTCGCACCAACTCTTTGTTGTAGGTCGACCCCTCACTGT
GTCGTGCA
UFO01115.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpb-RB | 1713 | CG17158-RB | 148..975 | 51..877 | 4100 | 99.8 | Plus |
| cpb-RA | 1591 | CG17158-RA | 211..1038 | 51..877 | 4100 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1705399..1706224 | 53..877 | 4065 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:00:12 has no hits.
UFO01115.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:11 Download gff for
UFO01115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 209..1036 | 51..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:19 Download gff for
UFO01115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1038 | 51..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:50 Download gff for
UFO01115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1038 | 51..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:50 Download gff for
UFO01115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1705391..1706224 | 42..877 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:19 Download gff for
UFO01115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1705391..1706224 | 42..877 | 99 | == | Plus |
