UFO01116.5prime Sequence
1202 bp (1052 high quality bases) assembled on 2008-07-09
> UFO01116.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGAGCCTGCAGTCGATCAAGTACTCGCGGGGCAGCCTGGAGATCCTCG
ACCAGCTGCTCCTGCCCGGTCAGTCAAAGTACGTGGTGGTGCGAGGAGTG
GAGGATGGCTGGAAGGTCATCAACAAGATGCAGGTGCGTGGTGCTCCGGC
CATCGCTATCGTTGGCTGCCTCTCCCTGGCCGTGGAAATCAACCCGGAGG
ATTTTGAGAACAAGAAATCACTGCGGCAGGAGATTGAGGGAAAGTTGAAC
TATTTGGTTTCCGCCAGGCCTACGGCGGTCAACATGAAGATCGCAGCCGA
CGAGCTCATCACCCTGGCCAACGAACTTTACAAGGACGAGGCAATCGACG
TGACCCAAATGAAGCATAGATTTCTGGACGCGACCGAAGCTATGCTAAAA
AAAGACATTGCCGATAACCGTGCCATTGGAGCGAATGGAGCCCAGGCGAT
CCTACAGGGCGTGGCGAAGGCAGGTAAAGCGCCCGCTGGATCGACGGGAT
CCGTCCGGGTGCTTACCCACTGCAACACGGGTTCCCTGGCCACCGCCGGG
TACGGTACAGCTCTGGGAGTGGTCCGCCAACTGGCCGAGCTGGGAAAACT
GGAGCACGTTTATTGCACAGAGACTCGTCCTTACAATCAGGGAGCCCGCC
TCACAGCCTACGAACTGGTCCACGAGAAATTCCCCGCCACTCTGGTTCTG
GATAGCATGGTGGCGGCTCTGCTGCGGGCCAAAAATGTGGCTGCTGTGGT
TGTAGGAGCAGATCGTGTGGCCTCCAATGGCGACACGGCCAACAAGATTG
GTACCTACCAGATTGCCGTGGTTGCCAAGCACCACGACGTGCCATTTTAC
GTAGCCGCCCCTCTGACTTCCATCGATCTAGCGATTCCCGGGAGGCGATC
ACATCATCATTGAGAGCGTCCCGACCGGGAAATGACGCACGTGGGAGAGC
ACCGCATCGCTGCCCCGGGCATTACTGCTGAACCCCGCCTTCGATGGTGA
CCCTGCCTCTCTGATCAAAGCATCATCACGGAACGCGTGTCTTCCAGCGC
GACTGAAGAGCCATCACTAGTGCTAGAGTCCGCAGCCTTCTAAACATCGT
GGCCGCGGGCAGGTAATGCTTAATCTAAATCAATCTAATCATAAATCCAC
CA
UFO01116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11334-RC | 1380 | CG11334-RC | 96..1187 | 52..1131 | 5060 | 98.4 | Plus |
| CG11334-RB | 1452 | CG11334-RB | 168..1259 | 52..1131 | 5060 | 98.4 | Plus |
| CG11334-RA | 1516 | CG11334-RA | 232..1323 | 52..1131 | 5060 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31460921..31461158 | 419..182 | 1190 | 100 | Minus |
| 3R | 32079331 | 3R | 31460630..31460864 | 652..418 | 1175 | 100 | Minus |
| 3R | 32079331 | 3R | 31460068..31460341 | 1087..817 | 1050 | 96.4 | Minus |
| 3R | 32079331 | 3R | 31460398..31460564 | 818..652 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 31461811..31461945 | 186..52 | 675 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3833..3877 | 367..323 | 117 | 73.3 | Minus |
UFO01116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:48 Download gff for
UFO01116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11334-RB | 143..1204 | 49..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:09 Download gff for
UFO01116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11334-RA | 229..1290 | 49..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:53 Download gff for
UFO01116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11334-RA | 229..1290 | 49..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:53 Download gff for
UFO01116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31460068..31460341 | 817..1087 | 97 | <- | Minus |
| 3R | 31460400..31460563 | 653..816 | 100 | <- | Minus |
| 3R | 31460630..31460862 | 420..652 | 100 | <- | Minus |
| 3R | 31460921..31461156 | 184..419 | 100 | <- | Minus |
| 3R | 31461814..31461948 | 49..183 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:09 Download gff for
UFO01116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27287536..27287670 | 49..183 | 99 | | Minus |
| arm_3R | 27285790..27286063 | 817..1087 | 97 | <- | Minus |
| arm_3R | 27286122..27286285 | 653..816 | 100 | <- | Minus |
| arm_3R | 27286352..27286584 | 420..652 | 100 | <- | Minus |
| arm_3R | 27286643..27286878 | 184..419 | 100 | <- | Minus |
