UFO01117.5prime Sequence
1203 bp (1054 high quality bases) assembled on 2008-07-09
> UFO01117.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGAGCAGTCGCAAGCACAGAGGCTCCGAAAACATGGAAAATTTGTGCC
CGGTGACCAGAAAGCGCTCGACTAATAAGAACCACGTCTCTGTTGTGGGC
GCTCTAGTTTCCACTACGAAGTCATCGCACTACGAGCACCCTTCCTCGCC
CTCGGCACTAACTTTTGAGGCCCTAGAAGAGATGGGAATCGGAATGCTTG
ATTCCGAAGAAAGCAGCTCCTCAGCCCTCTCGGCCATCGCTTTGGCGGTT
AGCGCCACCAGCGACGACAACTCAAATGAGACGACCCCGTGCGCCAGTGT
GTCGCGCATGGCGCACCAGCTACAGCACACGCAACGGCTAAGTCTGGGCT
CTACGGGGGACATCACACTGGATAGCCCAGCTGTGGAGGATTCACTGTCG
ATGTCCCGTCAATCGGCCGAGAAGCTGCAGATTCTGGCGCAGGCTAAGCG
CTCGTCGTTGGGTTCTGAAGGTAGCGGCAATTCAAACTCGCCCAGCAAAC
GTTTGCGCAACCCCCTGGCTGCAGTCACCTGTAACAACCAGATTGATGGG
ACTGCTTCGCTCAATTTTCAGCCATCAACCAGCAGGTTGGCGCAAGTTCG
CCAGGCAAAAAAGCCCTCGACAACAAATATTACAACCCGAATAGTGGCAG
CGGACAGTTTCTTTGTGTTTCGCACCCCGGCCATGAGTGCCCACATCAAC
AGCGGCATAAACTACTTTGAAAGACTTTCAGACGAAATACTACTTGACAT
CTTTAAGTGGCTCCCGAAGAAGACGCTGCTGCGCATGGCTACCGTTTGTC
GACGCTTTAACCGCTGCTCTCGCGATGAGACTTTGTGGACAAGGCTAGAT
TTGGGTTTGCGGACAATTAGACCAGGTGCCCTCGAGCAATTGTACGGCGG
GGAGTCCTTGTAATACGTCTGGCCCAGACTAGTGTAGTTACATCGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGTCATAATCATA
TCATATCATATCATATCCACTAGCTAAGAGATCTGTCATGACTATGGCTG
ATTCCCACAATAAAACGCCGCGCAACGAGCGTCTGACCAATCGATGGATT
CGAGTCATACTGATCATCACACGGAATCCAGCGACTCGTAATATCAAATT
AGG
UFO01117.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1853 | CG9772-RE | 69..1001 | 52..983 | 4640 | 99.9 | Plus |
| Skp2-RA | 2412 | CG9772-RA | 69..1001 | 52..983 | 4640 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4336466..4337345 | 986..108 | 4350 | 99.9 | Minus |
| 3R | 32079331 | 3R | 4337548..4337606 | 110..52 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:27 has no hits.
UFO01117.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:13 Download gff for
UFO01117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-RC | 75..1032 | 46..1003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:06 Download gff for
UFO01117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 75..1013 | 46..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:58 Download gff for
UFO01117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 63..1001 | 46..983 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:58 Download gff for
UFO01117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4336450..4337342 | 111..1003 | 99 | <- | Minus |
| 3R | 4337548..4337612 | 46..110 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:06 Download gff for
UFO01117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 162172..163064 | 111..1003 | 99 | <- | Minus |
| arm_3R | 163270..163334 | 46..110 | 95 | | Minus |
