UFO01121.5prime Sequence
1201 bp (1035 high quality bases) assembled on 2008-07-09
> UFO01121.5prime
CGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACA
TGCCCGGAGCCGGCACGTTCAAGTTATTCATCGGGAATCTTGACGAGAAG
ACACAGGCCACCGAGCTGCGTGCACTGTTCGAGAAGTACGGTACCGTCGT
CGAGTGCGACGTGGTGAAGAACTATGGCTTCGTTCACATGGAGACGGAGC
AGCAGGGTCGCGATGCCATACAGAATCTGAACGGTTATACGCTGAACGAG
TTCGCCATCAAGGTGGAGGCGGCCAAGAGCCGGCGGGCGCCCAATACGCC
GACCACGAAAATCTTCGTGGGAAATCTAACGGACAAGACGCGGGCGCCGG
AGGTGCGGGAACTGTTTCAGAAATACGGCACCGTCGTCGAATGCGACATT
GTGCGCAACTATGGTTTTGTCCATCTGGACTGTGTCGGTGATGTGCAGGA
CGCCATTAAGGAGCTGAACGGTCGCGTTGTCGATGGCCAGCCGCTCAAGG
TTCAAGTGTCGACCAGTCGGGTCCGCCCCAAGCCGGGCATGGGCGATCCG
GAGCAGTGCTATCGGTGCGGAAGATCCGGGCATTGGTCGAAAGAGTGTCC
GCGACTGTACGGCAGTGCCGGAGGCGGACGCGAGCCGCCATCGCCCCTCA
GCGCCGGCGGCTACAGAGATCGCATGTACGGTCGTGACCCGTATCCGCCG
CCACCACCGCCGCCGCCGTTCCTGCGTGACCGCATCATGGATGGCTTTAG
GGACTATGACTACTATGACCGCCGCTTCGAGGACTCACGCGATCTGTATG
AGCGTCGCTATCAGACCTCGCGAATGCGCGACTTCCCACCGCCGCCCATC
TCTCGCCGCGAACCCATGCCTCTACCGCCCACCTTAAGCGGCAGCCTGCG
CTCTGCAGCGTTTCTCGTGATACGACACTTTGTTCAGCCGCGCTCGCCTC
CGCCGCCGCGTAGCAGCAATGGAATGAGTCGCTACGCTCGCCACTCCACA
CGGTTACGAGGACTTAGTCGCGATGCATTCGACGAACGCATGATTCCGTT
CGCGCGAATGCCCGGTCCATCGCCGCCGGTCGCAGATTGCGCCTAGCCAA
GCTTCTAGAACATTCGTTTGAGCGCGGCCCAGTAAGTGTTATCGTATCTA
ACTTAATCCTATCAAACTAGGCTAAGAGATCCCTGGGTCGAGAACCATAT
G
UFO01121.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lark-RD | 1758 | CG8597-RD | 276..1328 | 49..1093 | 4975 | 98.8 | Plus |
| lark-RE | 2087 | CG8597-RE | 605..1657 | 49..1093 | 4975 | 98.8 | Plus |
| lark-RC | 1784 | CG8597-RC | 302..1354 | 49..1093 | 4975 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7340068..7340771 | 49..752 | 3520 | 100 | Plus |
| 3L | 28110227 | 3L | 7340875..7341113 | 751..986 | 1030 | 98.3 | Plus |
| 3L | 28110227 | 3L | 7341358..7341447 | 991..1079 | 280 | 90 | Plus |
Blast to na_te.dros performed 2014-11-28 20:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| micropia | 5461 | micropia DMDM11 5461bp | 1271..1332 | 556..615 | 125 | 69.4 | Plus |
UFO01121.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:14 Download gff for
UFO01121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lark-RC | 291..1346 | 46..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:44 Download gff for
UFO01121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lark-RC | 299..1354 | 46..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:22 Download gff for
UFO01121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lark-RC | 299..1354 | 46..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:22 Download gff for
UFO01121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7340065..7340770 | 46..751 | 99 | -> | Plus |
| 3L | 7340876..7341114 | 752..986 | 97 | -> | Plus |
| 3L | 7341353..7341447 | 987..1079 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:44 Download gff for
UFO01121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7333976..7334214 | 752..986 | 97 | -> | Plus |
| arm_3L | 7334453..7334547 | 987..1079 | 93 | == | Plus |
| arm_3L | 7333165..7333870 | 46..751 | 99 | -> | Plus |
