UFO01122.5prime Sequence
1249 bp (1019 high quality bases) assembled on 2008-07-09
> UFO01122.5prime
TGCGGCCGCATAACATCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGACTAAAGACAGATTAGCCGCTCTCCATGCCGCCCAATCCGATGACG
AGGAGGAGACGGAGGTGGCCGTCAATGTGGATGGCCATGATTCCTACATG
GACGACTTCTTCGCCCAGGTGGAGGAGATCCGCGGGATGATCGACAAGGT
GCAGGATAACGTCGAGGAGGTAAAGAAGAAGCACTCGGCCATCCTGTCCG
CCCCACAAACGGACGAGAAGACCAAGCAAGAGCTGGAGGATCTGATGGCC
GACATCAAGAAGAATGCCAATCGCGTTCGCGGCAAGCTCAAGGGCATCGA
GCAGAACATCGAGCAGGAAGAGCAGCAGAATAAGTCGTCGGCGGATCTGA
GAATTCGGAAGACGCAGCACTCGACGTTGTCACGGAAATTCGTCGAAGTG
ATGACCGAGTACAATCGCACGCAGACCGACTACCGAGAGCGCTGCAAGGG
AAGGATACAGCGTCAACTGGAGATTACCGGACGACCGACCAACGACGATG
AGCTGGAGAAGATGCTGGAGGAGGGCAACTCGTCTGTGTTCACGCAGGGC
ATCATCATGGAGACGCAGCAGGCCAAACAGACGCTGGCGGACATTGAGGC
CCGCCACCAGGACATCATGAAGCTGGAGACATCGATCAAAGGAGCTGCAC
GACATGTTCATGGACATGGCCATGCTGGTGGAGTCGCAGGGCGAGATGAT
CGATCGCATTGAGTACCATGTGGAGCACGCTATGGACTATGTGCAGACGG
CAACTCAGGACACCAAGAAGGCGCTCAAGTACCAGAGTAAAGCCCGACGA
AAGAAGATCATGATACTGATCTGCCTCACTGTGCTGGGCATCTTACCGCC
CTCATATGTTAGCAGTTTATTTCATGGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGTAAGTGGTCATAAATCATAATCATAAATCATAATC
ATAATCCACAAACTAGCCCTAGGAGAATCCTGGTCATGACTAAGGGCTTG
GAATTCCCCACCAATAAAAAAACGCCCCCGCCGGCAACCGACGCGTTTCT
GAACAAATCCCGATGGGAGTCCTAGGCTATTACTGGAATCTATCAACAGG
AAGTCCAGCGGAGCCTCGATATTCAAATTACCCGGACCTGCACCTCATCC
GATACGTTGTAAATCTGTAATACTATCTCGCGTCGCAACAACTGGACAG
UFO01122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx1A-RA | 2385 | CG31136-RA | 1321..2193 | 52..926 | 4295 | 99.5 | Plus |
| Syx1A-RB | 2639 | CG31136-RB | 1321..2192 | 52..925 | 4290 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24103579..24104443 | 917..52 | 4250 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:42:50 has no hits.
UFO01122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:06 Download gff for
UFO01122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx1A-RA | 1301..2180 | 52..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:46 Download gff for
UFO01122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx1A-RA | 1321..2200 | 52..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:12 Download gff for
UFO01122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx1A-RA | 1321..2200 | 52..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:12 Download gff for
UFO01122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24103564..24104449 | 48..933 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:46 Download gff for
UFO01122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19929286..19930171 | 48..933 | 98 | -> | Minus |
