UFO01123.5prime Sequence
1212 bp (1069 high quality bases) assembled on 2008-07-09
> UFO01123.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGCCCGTGAAAACAGTGAATCGCCAGCAGAGCCAAACGCCCGCCCA
ACAACTGCAATTGCAGCAGCAGCGGGACGTCGAGAATGGGCTCTATCCCA
CGATTCCGGCCGAGCGACGATCGCCCCCCTCGCGTCCGCAAACGCTGCGA
CAGGACACCATCGATATGGAGGAAATACCGCTCAATCAGACGAACAGCCA
GGAGCCAGAGGATCGGCGCAAAATGCACGAGATATTTGACAAGCACGACT
CTGACAGAGATGGGCTGATCAACACGCACGAGCTGAAGGAACTGATCTCG
GATGGCTATTGCCGGGACATTCCCGCCTACATCGCCGACCAGATCCTGAA
GCGCAGCGATCAGGATAACGACGGCCACCTGGACTTCGAGGAATTCTATG
CGATGTCCCTGCGCCACAAGTGGATGGTGCGCAACATGCTGACCCGCTAC
TGTCGCTACGTTGTGCCGCCACCGAAGCCCTTAGAGGGCGATGAGCCCGA
CGGTGCCTACGAGAAGCAAATGTCCATCTGCCCGCCGCCGCTCACCATGG
TGCTCTTCTCGATTATCGAGATAATCATGTTCCTCGTGGACGTCATACAT
TTCCAGGACGATCCCAACTACCAGGATCGCATAGGCGAGAGCACAAGTGG
ACCAGCGGCCACCCTGTTCATCTACAATCCGTACAAGCGCTATGAGGGAT
GGCGCTTTGTTAGCTACATGTTCGTTCACGTGGGCATCATGCATCTGATG
ATGAACCTGATTATCCAGATCTTTCTGGGCATCGCCCTGGAGCTGGTGCA
TCACTGGTGGCGCGTGGGTCTGGTCTACCTGGCTGGCGTGTTAGCCGGTT
CCATGGGCACCTCGCTAACCAGTCCTCGCATCTTTCTAGCGGGGCGCATC
GGGTGGAGTATACGCACTGATCACAGCCCACATTGCCACGATAATATGAC
TACTCGGAAATGGAGTACGCCATTGTCCAGCTGCTGCTTTCTGGTCTTCT
GCTCACCGACTGGGTACTCGGTGTACCGCCACTGACGAACAACACGATCC
GAATGCCTATGTGGCGCATTGTCGTGCGTGCGATGCCTGGTGGGATCGGG
TGCTGCAATGAAGTGTGCAGCATGAAGCCAATTCTCTGAGGGATTGCGAT
GGTACACTTTTG
UFO01123.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-4-RB | 2345 | CG1697-RB | 250..1324 | 54..1120 | 5065 | 98.6 | Plus |
| rho-4-RA | 2057 | CG1697-RA | 250..1324 | 54..1120 | 5065 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11604310..11604674 | 292..656 | 1825 | 100 | Plus |
| X | 23542271 | X | 11604736..11605074 | 656..995 | 1650 | 99.7 | Plus |
| X | 23542271 | X | 11600087..11600326 | 54..293 | 1200 | 100 | Plus |
| X | 23542271 | X | 11589621..11589726 | 54..159 | 455 | 95.3 | Plus |
| X | 23542271 | X | 11591714..11591819 | 54..159 | 455 | 95.3 | Plus |
| X | 23542271 | X | 11595900..11596005 | 54..159 | 455 | 95.3 | Plus |
| X | 23542271 | X | 11593807..11593912 | 54..159 | 440 | 94.3 | Plus |
| X | 23542271 | X | 11597993..11598098 | 54..159 | 440 | 94.3 | Plus |
| X | 23542271 | X | 11587528..11587633 | 54..159 | 440 | 94.3 | Plus |
| X | 23542271 | X | 11605139..11605267 | 999..1120 | 260 | 89.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:45:22 has no hits.
UFO01123.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:30 Download gff for
UFO01123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-4-RA | 247..1331 | 54..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:52 Download gff for
UFO01123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-4-RA | 250..1334 | 54..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:58 Download gff for
UFO01123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-4-RA | 250..1334 | 54..1131 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:58 Download gff for
UFO01123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11600087..11600326 | 54..293 | 100 | -> | Plus |
| X | 11604312..11604673 | 294..655 | 100 | -> | Plus |
| X | 11604736..11605078 | 656..998 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:52 Download gff for
UFO01123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11494120..11494359 | 54..293 | 100 | -> | Plus |
| arm_X | 11498345..11498706 | 294..655 | 100 | -> | Plus |
| arm_X | 11498769..11499111 | 656..998 | 99 | -> | Plus |
