UFO01124.5prime Sequence
1234 bp (1065 high quality bases) assembled on 2008-07-09
> UFO01124.5prime
GATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAG
TCGACATGTGTGTGAATCGAGAAACGCAGAGCAGCAGCAACAATAATAGC
AACAACACTACAACGGCAACGTCAACAGCACGCAACAACAACAGCCACAA
CGGACGCTGTGAGTGCGACGGAGACGGCGACAGCGTGAGTCATATACAAA
GTGAAATGAAAATGCGGATAAAGCGAGAAGCGCCGTGTCTTCTGTTATTT
ATGCCAATCCAAAATACCAACAACAACAATCGCATTGGTGCCAATCAGAA
GGACTATCCCAACAAGCGGTCCAGGGAGAATCTGGCATGTGACGAAGTGA
CATCGACGACGTCATCATCCACGGCAATGAACGGCGGCGGACGGACGCCG
GCGCTAACCCGCAGCTGCTCCAGTCCGGCGGTCTACGATATAGAAACACA
CCCCGCCTCGCCCGTTTTCCCGCATCTATTGCTGGGCAATGGACGCGACG
CCGACGATCCCAGCAGCGTGGGCGCCAACTGTGTGCTGAACGTTACCTGC
CAAAGTCCCAATGAGAGCCATCTGCAGGGCCTCAAGTACATGCAAATACC
TGCCAGCGATACGCCACATCAGAACATCAAGCAGTACTTCCAGGAGGCCT
ACGACTTTATCGAAGATGCACGGAAAACGGGTTCCCGAGTGCTGCTGCAC
TGCCACGCGGGGATTTCGCGGAGCGCCACCATTGCCATCGCCTACGTCAT
GCGGTACAAGTCGCTCTCCCTGCTGGAGGCCTACAAGCTGGTGAAAGTGG
CCCGGCCGATCATCTCGCCCAATCTGAACTTCATGGGCCAGCTGCTGGAG
CTGGAGCAGAATTTGCGCAAGAGCGGAGTCCTGGCGCCCGCAACCCCGCA
CCTGAATAGTCCTAGCAATCCTTCGTCATCTTCTGTGGGATTAAGCACCC
AATCTAGTCAACTGGTGAGCAGCCAGAGGAGGAAGAAAAGCGGGAACAGC
GGGAAACGGGGTAAATCCAAGTCGGATAGCGAGGCTATGGACGAGGATGG
GTTTGATTACGATGATGTGGAACAGCGGCTCCGGCAGCCTGGCGGGTAGT
ACTGCTCATCAGATGACCTCGCCGCCCATTACCCGGAATGACGAGCGCCC
AGCACTTCGGCGACGCTCGTCGATTACGAACTTAAATTCACCAGCTCCAA
AGCAGCACAGCAGTTAATTCGTGATTCACATGCA
UFO01124.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| puc-RA | 2919 | CG7850-RA | 530..1688 | 56..1207 | 5335 | 98 | Plus |
| puc-RB | 2407 | CG7850-RB | 252..1176 | 290..1207 | 4165 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8120511..8121014 | 662..1162 | 2105 | 97.6 | Plus |
| 3R | 32079331 | 3R | 8105861..8106095 | 56..290 | 1175 | 100 | Plus |
| 3R | 32079331 | 3R | 8111076..8111301 | 437..662 | 1130 | 100 | Plus |
| 3R | 32079331 | 3R | 8108231..8108378 | 290..437 | 725 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:10:19 has no hits.
UFO01124.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:08 Download gff for
UFO01124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| puc-RA | 527..1651 | 56..1175 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:11 Download gff for
UFO01124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| puc-RA | 530..1654 | 56..1175 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:54 Download gff for
UFO01124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| puc-RA | 530..1654 | 56..1175 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:54 Download gff for
UFO01124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8105861..8106095 | 56..290 | 100 | -> | Plus |
| 3R | 8108232..8108378 | 291..437 | 99 | -> | Plus |
| 3R | 8111077..8111301 | 438..662 | 100 | -> | Plus |
| 3R | 8120512..8121029 | 663..1175 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:11 Download gff for
UFO01124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3936799..3937023 | 438..662 | 100 | -> | Plus |
| arm_3R | 3931583..3931817 | 56..290 | 100 | -> | Plus |
| arm_3R | 3933954..3934100 | 291..437 | 99 | -> | Plus |
| arm_3R | 3946234..3946751 | 663..1175 | 96 | | Plus |
