Clone UFO01125 Report

Search the DGRC for UFO01125

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:11
Well:25
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCtBP-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01125.5prime Sequence

1193 bp (1034 high quality bases) assembled on 2008-07-09

> UFO01125.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGACAAAAATCTGATGATGCCGAAGCGTTCGCGCATCGATGTCAAGG
GCAACTTTGCCAACGGACCGCTGCAAGCACGCCCACTGGTGGCCCTACTC
GATGGACGCGACTGCTCCATCGAGATGCCCATCCTAAAGGATGTGGCCAC
GGTGGCCTTTTGCGATGCACAAAGCACCTCCGAAATACACGAGAAGGTCC
TCAACGAGGCAGTGGGAGCTCTGATGTGGCACACCATCATCTTGACAAAG
GAGGATCTTGAGAAGTTCAAAGCTTTACGCATTATCGTGCGCATCGGCAG
CGGCACAGACAACATTGATGTAAAGGCGGCGGGCGAACTGGGCATCGCCG
TGTGCAACGTTCCCGGCTACGGAGTCGAGGAGGTGGCGGACACGACGATG
TGCCTCATCCTCAACCTCTACCGGCGGACATACTGGCTAGCGAACATGGT
GCGCGAGGGCAAGAAGTTCACCGGACCCGAGCAAGTGCGGGAGGCTGCGC
ATGGCTGTGCACGCATCCGCGGCGACACCTTGGGTCTGGTGGGACTGGGC
CGCATTGGTAGCGCCGTGGCCCTGCGGGCTAAGGCGTTCGGCTTCAACGT
CATCTTCTACGATCCCTACCTGCCCGATGGCATCGACAAGTCGCTGGGCC
TAACTCGCGTCTACACGCTGCAGGACCTGCTTTTCCAGTCCGATTGCGTC
TCACTGCATTGCACGCTCAACGAGCACAACCATCATTTAATCAATGAATT
CACAATTAAACAGATGCGACCTGGTGCATTTCTGGTGAACACCGCACGCG
GCGGTCTGGTCGATGACGAGACCCTGGCGTTGGCGCTGAAGCAGGAAGGA
TAAGAGCTGCCGCCCTGTACGTTCACGAAACGAACCTTACATGTATTTCA
GGCGCACTGAAGGATGCCCCAATCTGATTTGCACACCGCACGCCGCTTCT
TCAGCGACGCGTCCGCACGAGCTGCCGAAATGGCAGCCACCGAGATCGGC
GGGCGATCGTCGCAATATTCAGACGTGCTGAGATGCGTCACAGGAGTACT
TCATGCCACGCGCTGACGTGCCGCCGGGCCTGACGCGCTGTTACGGACGT
ACTACAATGAAATTCAACTCAAGAAAGGGCAGAGCTTCCTTGA

UFO01125.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
CtBP-RA 3959 CG7583-RA 375..1476 48..1128 4950 97.8 Plus
CtBP-RB 1719 CG7583-RB 515..1616 48..1128 4950 97.8 Plus
CtBP-RE 2612 CG7583-RE 375..1476 48..1128 4950 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13019894..13020202 245..553 1545 100 Plus
3R 32079331 3R 13020849..13021114 548..813 1315 99.6 Plus
3R 32079331 3R 13019616..13019816 48..248 990 99.5 Plus
3R 32079331 3R 13021172..13021305 810..941 555 97.8 Plus
3R 32079331 3R 13021420..13021559 951..1082 320 93.6 Plus
Blast to na_te.dros performed on 2014-11-28 19:43:21 has no hits.

UFO01125.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:53 Download gff for UFO01125.5prime
Subject Subject Range Query Range Percent Splice Strand
CtBP-RE 355..1459 44..1128 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:03 Download gff for UFO01125.5prime
Subject Subject Range Query Range Percent Splice Strand
CtBP-RE 372..1476 44..1128 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:29 Download gff for UFO01125.5prime
Subject Subject Range Query Range Percent Splice Strand
CtBP-RE 372..1476 44..1128 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:29 Download gff for UFO01125.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13019616..13019814 46..246 98 -> Plus
3R 13019896..13020201 247..552 100 -> Plus
3R 13020854..13021114 553..813 100 -> Plus
3R 13021176..13021316 814..950 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:03 Download gff for UFO01125.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8845338..8845536 46..246 98 -> Plus
arm_3R 8845618..8845923 247..552 100 -> Plus
arm_3R 8846576..8846836 553..813 100 -> Plus
arm_3R 8846898..8847038 814..950 96 -> Plus