UFO01125.5prime Sequence
1193 bp (1034 high quality bases) assembled on 2008-07-09
> UFO01125.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGACAAAAATCTGATGATGCCGAAGCGTTCGCGCATCGATGTCAAGG
GCAACTTTGCCAACGGACCGCTGCAAGCACGCCCACTGGTGGCCCTACTC
GATGGACGCGACTGCTCCATCGAGATGCCCATCCTAAAGGATGTGGCCAC
GGTGGCCTTTTGCGATGCACAAAGCACCTCCGAAATACACGAGAAGGTCC
TCAACGAGGCAGTGGGAGCTCTGATGTGGCACACCATCATCTTGACAAAG
GAGGATCTTGAGAAGTTCAAAGCTTTACGCATTATCGTGCGCATCGGCAG
CGGCACAGACAACATTGATGTAAAGGCGGCGGGCGAACTGGGCATCGCCG
TGTGCAACGTTCCCGGCTACGGAGTCGAGGAGGTGGCGGACACGACGATG
TGCCTCATCCTCAACCTCTACCGGCGGACATACTGGCTAGCGAACATGGT
GCGCGAGGGCAAGAAGTTCACCGGACCCGAGCAAGTGCGGGAGGCTGCGC
ATGGCTGTGCACGCATCCGCGGCGACACCTTGGGTCTGGTGGGACTGGGC
CGCATTGGTAGCGCCGTGGCCCTGCGGGCTAAGGCGTTCGGCTTCAACGT
CATCTTCTACGATCCCTACCTGCCCGATGGCATCGACAAGTCGCTGGGCC
TAACTCGCGTCTACACGCTGCAGGACCTGCTTTTCCAGTCCGATTGCGTC
TCACTGCATTGCACGCTCAACGAGCACAACCATCATTTAATCAATGAATT
CACAATTAAACAGATGCGACCTGGTGCATTTCTGGTGAACACCGCACGCG
GCGGTCTGGTCGATGACGAGACCCTGGCGTTGGCGCTGAAGCAGGAAGGA
TAAGAGCTGCCGCCCTGTACGTTCACGAAACGAACCTTACATGTATTTCA
GGCGCACTGAAGGATGCCCCAATCTGATTTGCACACCGCACGCCGCTTCT
TCAGCGACGCGTCCGCACGAGCTGCCGAAATGGCAGCCACCGAGATCGGC
GGGCGATCGTCGCAATATTCAGACGTGCTGAGATGCGTCACAGGAGTACT
TCATGCCACGCGCTGACGTGCCGCCGGGCCTGACGCGCTGTTACGGACGT
ACTACAATGAAATTCAACTCAAGAAAGGGCAGAGCTTCCTTGA
UFO01125.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtBP-RA | 3959 | CG7583-RA | 375..1476 | 48..1128 | 4950 | 97.8 | Plus |
CtBP-RB | 1719 | CG7583-RB | 515..1616 | 48..1128 | 4950 | 97.8 | Plus |
CtBP-RE | 2612 | CG7583-RE | 375..1476 | 48..1128 | 4950 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13019894..13020202 | 245..553 | 1545 | 100 | Plus |
3R | 32079331 | 3R | 13020849..13021114 | 548..813 | 1315 | 99.6 | Plus |
3R | 32079331 | 3R | 13019616..13019816 | 48..248 | 990 | 99.5 | Plus |
3R | 32079331 | 3R | 13021172..13021305 | 810..941 | 555 | 97.8 | Plus |
3R | 32079331 | 3R | 13021420..13021559 | 951..1082 | 320 | 93.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:43:21 has no hits.
UFO01125.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:53 Download gff for
UFO01125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RE | 355..1459 | 44..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:03 Download gff for
UFO01125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RE | 372..1476 | 44..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:29 Download gff for
UFO01125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RE | 372..1476 | 44..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:29 Download gff for
UFO01125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13019616..13019814 | 46..246 | 98 | -> | Plus |
3R | 13019896..13020201 | 247..552 | 100 | -> | Plus |
3R | 13020854..13021114 | 553..813 | 100 | -> | Plus |
3R | 13021176..13021316 | 814..950 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:03 Download gff for
UFO01125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8845338..8845536 | 46..246 | 98 | -> | Plus |
arm_3R | 8845618..8845923 | 247..552 | 100 | -> | Plus |
arm_3R | 8846576..8846836 | 553..813 | 100 | -> | Plus |
arm_3R | 8846898..8847038 | 814..950 | 96 | -> | Plus |