UFO01126.5prime Sequence
1202 bp (1041 high quality bases) assembled on 2008-07-09
> UFO01126.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGAGTCTACAGGACGAGAGTTTTCCGACGGACGAGCTGTTTGACCAGC
TGAACAATTTGAGTAGCAGTGGCGCCAGGAATACCTGGTTCGCGGAGCAC
CATAAGCCCGCAGTCTTCGAGCGGGATACAGCGCCATTTTTGGAGATCTG
CTACGCGGATCCAGACTTTGATGCGGATGGGGATGTGGCCAACAAGAGCG
CCAAGACATGCGTAAGCGATCCCGTGGGTCGTGATCAGGAGGATGAGGAC
GACTATGATGAGGATGTCGATGGCGATGATCATAAACTGGGTTGCGAGAA
GGCTCCATTGGGCAGCGGGCGCTCCAGCAAGGCGGTCTCTTACCAGGACA
TCCATTCGGCCTACACGAAGCGCCGCTTCCAGCACGTGACCAGCAAGGTG
GGCCAGTACATAGCGGAGATCCAGGCGCAGGACCAAAAGAGACGCAATGT
GAAGTTCGCCGGATTCCAGCGAGTGAACTCTATGCCGGAGAGTCTAACGC
CCACATTGCAGCAGGTGTATGTCCATGATGGTGACTTCAAGGTGGACAAA
AACTGCCAGACTCACTCCAACTCCGATTCGAATTACAATTCCAATTCAAA
CAACTCTAGCAGCAGCTTTGATCGATTGCTGGCCGAGAACGAGAGCCTGC
AGCAAAAGATCAACTCATTGAGAGTAGAAGCGAAGCGTCTGCAGGGCTTC
AACGAGTATGTCCAGGAACGACTGGACAGAAAGACAGATGATTTTGTGAA
GATGAAGTGCAATTTCGAGACCCTGCGCACCGAGCTAAGCGAATGCCAGC
AGAAGCTTACGCGCCAGCAGGACAACTCACAGCACCACTTCATGTACCAC
ATTCGATCGGCGACCAGTGCCAAGGCCACTCAACGGATTTCCTGGTGGAC
ACCATACCCGCCTCCGGAAACGTCCTGTCACACCCCATCCCCTGGCGACC
TGACCTACACAGCAGCAAAGGATCATCGAGTGGCACTGCTCAGTGTGGCG
CCTTCTGCCGAGTGACCAGATCCGTCAGTCCACGCGCGATCAATCCACAA
TCTTTGGACTTTAGCACGTAGCACCGAGCTGATGGACCACGGTATGGGAA
CTCTGTGAAACCTCATCTCAGGGCCTGTGTTCAGAAGAACCCCGGGGGCC
CA
UFO01126.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swa-RA | 2022 | CG3429-RA | 113..1274 | 52..1195 | 5120 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6364402..6365145 | 1059..322 | 3405 | 99.1 | Minus |
| X | 23542271 | X | 6362208..6362662 | 993..532 | 1375 | 87.9 | Minus |
| X | 23542271 | X | 6365325..6365596 | 323..52 | 1360 | 100 | Minus |
| X | 23542271 | X | 6362667..6362833 | 491..325 | 625 | 91.6 | Minus |
| X | 23542271 | X | 6363110..6363242 | 323..185 | 525 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:48 has no hits.
UFO01126.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:18 Download gff for
UFO01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swa-RA | 110..1191 | 45..1116 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:13 Download gff for
UFO01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swa-RA | 109..1190 | 45..1116 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:12 Download gff for
UFO01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swa-RA | 109..1190 | 45..1116 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:12 Download gff for
UFO01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6364338..6365144 | 323..1116 | 97 | <- | Minus |
| X | 6365326..6365600 | 45..322 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:13 Download gff for
UFO01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6258371..6259177 | 323..1116 | 97 | <- | Minus |
| arm_X | 6259359..6259633 | 45..322 | 98 | | Minus |
