UFO01127.5prime Sequence
1193 bp (1015 high quality bases) assembled on 2008-07-09
> UFO01127.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGGACTTACAGCATATGGAGAATGGTCTAAGCGGCGGGGGAGGAGG
TGGCCTAAGCGAAATAGATTTCCAAAGGCTGGCCCAGATTATAGCCACCA
GCATCCAGAAGGTGCAGCAGAATGTGTCCACGATGCAGCGCATGGTCAAT
CAACTGAACACGCCCCAAGATTCTCCGGAGCTCAAGAAGCAGCTCCACCA
AATAATGACCTACACCAACCAGCTGGTGACCGACACAAACAATCAAATCA
ACGAGGTGGACAAGTGCAAGGAGCGCCACCTGAAGATCCAGCGGGATAGG
CTCGTGGACGAGTTCACGGCGGCACTGACCGCCTTCCAGTCTGTTCAGCG
CAAGACGGCGGACATAGAGAAGACGGCGTTGCGGCAGGCGCGCGGAGATA
GCTACAACATCGCCCGTCCACCCGGCTCATCGCGTACCGGCAGCTCCAAC
AGTAGCGCCAGCCAGCAGGACAACAACTCCTTCTTCGAGGACAACTTCTT
CAATCGCAAATCAAACCAGCAACAGATGCAGACTCAGATGGAGGAGCAGG
CGGACCTGCAGGCCCTCGAGGAACAGGAGCAGGTCATACGGGAGTTGGAG
AACAACATCGTGGGCGTGAACGAGATATACAAGAAGCTTGGCGCCCTGGT
CTACGAGCAGGGACTGACGGTGGACTCCATCGAGTCGCAGGTGGAACAGA
CTAGCATTTTTGTCTCGCAGGGCACGGAAAATCTGCGCAAGGCGAGCTCT
TACAGGAACAAAGTGCGCAAGAAAGAAGCTTATTTTGGTGGGCATCCTGA
GCGCCGTGCTGCTGGCCATCATCTTGATACTCGTTTTTCAGTTCAAGAAT
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCAATAATCATAATCACAACTAGCCTAAGAGATCC
TGTCATGACTAGTGCTGAATCTCACAATAAAAAACGCCCGGCGGCAACGA
GCGTCTGAACAAATCAGAATGGAGTCTGAGTTCATACTGATCTATCAACA
GGAGTTCAAGGCGAGCTCGAAATCAATACGCCCCACTTGCATCATGAGTA
CTGTGATCATAAGCATTCTGCCGAAACTGAAGCCATTCCAAAA
UFO01127.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx7-RB | 1610 | CG5081-RB | 284..1130 | 53..900 | 4215 | 99.9 | Plus |
| Syx7-RA | 1573 | CG5081-RA | 247..1093 | 53..900 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21447079..21447497 | 388..806 | 2095 | 100 | Plus |
| 3L | 28110227 | 3L | 21446863..21447007 | 245..389 | 725 | 100 | Plus |
| 3L | 28110227 | 3L | 21446254..21446375 | 53..174 | 610 | 100 | Plus |
| 3L | 28110227 | 3L | 21447555..21447648 | 806..900 | 425 | 98.9 | Plus |
| 3L | 28110227 | 3L | 21446442..21446512 | 174..244 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:48:38 has no hits.
UFO01127.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:11 Download gff for
UFO01127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RB | 296..1152 | 53..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:56 Download gff for
UFO01127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RA | 247..1103 | 53..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:41 Download gff for
UFO01127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RA | 247..1103 | 53..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:41 Download gff for
UFO01127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21446254..21446375 | 53..174 | 100 | -> | Plus |
| 3L | 21446443..21446512 | 175..244 | 100 | -> | Plus |
| 3L | 21446863..21447007 | 245..389 | 100 | -> | Plus |
| 3L | 21447081..21447497 | 390..806 | 100 | -> | Plus |
| 3L | 21447556..21447658 | 807..910 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:56 Download gff for
UFO01127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21439354..21439475 | 53..174 | 100 | -> | Plus |
| arm_3L | 21439543..21439612 | 175..244 | 100 | -> | Plus |
| arm_3L | 21439963..21440107 | 245..389 | 100 | -> | Plus |
| arm_3L | 21440181..21440597 | 390..806 | 100 | -> | Plus |
| arm_3L | 21440656..21440758 | 807..910 | 95 | == | Plus |
