UFO01129.5prime Sequence
1233 bp (1045 high quality bases) assembled on 2008-07-09
> UFO01129.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGAGCGTTTCGATGTCACTGGTACAGGGTGGTGCTGCCGGTGGTGCGC
CACAGGGCGCCAGCGCAATCTTGGCCGCAGCGGCTCCCTACTATCAACCG
CCGGCTGTTCCCCAGGATGTTCAGCCGGATCGTCCTATCGGCTATGGAGC
ATTCGGAGTTGTCTGGGCCGTCACAGATCCTCGCGATGGACGACGAGTGG
CATTGAAGAAGCTGCCAAATGTGTTCCAATCGTTGGTCTCATCGAAGCGC
GTTTTTCGCGAGCTGAAAATGCTGTGCTTCTTCAAGCATGAAAATGTTCT
TTCAGCTCTGGACATTCTACAGCCACCGCATTTGGATTTCTTTCAAGAAA
TCTATGTGATAACGGAGCTGCTGCAATCGGATCTGCACAAGATAATCGTG
TCGCCACAGCACCTGTCCGCCGACCACATCAAGGTGTTCCTGTACCAGAT
CCTGCGCGGCCTCAAATATCTGCACTCGGCCCGCATCCTGCATCGCGACA
TCAAGCCGGGCAATCTGCTGGTCAACTCGAATTGCGTGCTCAAGATCTGT
GACTTTGGATTGGCCCGCGTCGAGGAGCCGGATCAGGCCAAGCACATGAC
CCAAGAGGTGGTCACCCAGTACTATCGCGCACCGGAGATTCTGATGGGCG
CTCGCCACTACTCGTCGGCGGTGGATGTATGGTCGGTGGGCTGCATTTTT
GGCGAGCTGCTGGGCCGTCGCATCCTCTTCCAGGCACAGAATCCTGTGCA
GCAGCTGGAGCTGATTACCGAGCTGCTTGGCACGCCCACCATGGAGGATA
TGCGTCACGCCCTGCGAGGGCGCCCGCACCCACATGTTGCGCCGGGCGCC
CAAGCCGCCATCCTTCTCGGTGCTCTACACACTCAGCTCGCATGCCACGC
ACGAGGCGGTGCACTTGCTCTGCCAGATGCTCGTCTTCGATCCGGATAGC
GCATCTCCGTGAAAGATGCCCTGCGCATCGTATCTGGGATGAGGGGCGTC
TGCCGCTATCACTCGTGCATGGTGCAAATGCTGCTCACTACCCTCAGCGA
ATGCTCAGATATACGCTGATTTGGAGCCTCCGCCGCAGGCCCTCGAATGT
ATCCTGGTGGAACGTAACTGAACTCCGTGACCAAGTTCAAGAGAGAGAAT
CCATAGGTTCATATTGCGGAGACCGACACGTCA
UFO01129.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nmo-RH | 6235 | CG7892-RH | 719..1849 | 52..1179 | 5075 | 97.5 | Plus |
| nmo-RG | 2250 | CG7892-RG | 548..1678 | 52..1179 | 5075 | 97.5 | Plus |
| nmo-RF | 2757 | CG7892-RF | 1055..2185 | 52..1179 | 5075 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8046570..8047162 | 402..995 | 2920 | 99.8 | Plus |
| 3L | 28110227 | 3L | 7980819..7980983 | 52..216 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 8039874..8040006 | 215..347 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 8045891..8045950 | 346..405 | 285 | 98.3 | Plus |
| 3L | 28110227 | 3L | 8047250..8047336 | 998..1085 | 185 | 93.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:02 has no hits.
UFO01129.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:36 Download gff for
UFO01129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RE | 711..1774 | 44..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:43 Download gff for
UFO01129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RF | 1050..2113 | 44..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:38 Download gff for
UFO01129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RF | 1050..2113 | 44..1108 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:38 Download gff for
UFO01129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7980814..7980982 | 44..215 | 98 | -> | Plus |
| 3L | 8039875..8040004 | 216..345 | 100 | -> | Plus |
| 3L | 8045891..8045946 | 346..401 | 100 | -> | Plus |
| 3L | 8046570..8047161 | 402..994 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:43 Download gff for
UFO01129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8038991..8039046 | 346..401 | 100 | -> | Plus |
| arm_3L | 7973914..7974082 | 44..215 | 98 | -> | Plus |
| arm_3L | 8032975..8033104 | 216..345 | 100 | -> | Plus |
| arm_3L | 8039670..8040261 | 402..994 | 99 | -> | Plus |
