UFO01130.5prime Sequence
1178 bp (1016 high quality bases) assembled on 2008-07-09
> UFO01130.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGTCATCCCGTAAGACCGCCGGACGTCGCGCCACCACCAAGAAGCGC
GCCCAACGCGCCACCTCCAATGTGTTCGCCATGTTCGATCAGGCGCAGAT
TGCCGAGTTCAAGGAGGCATTCAACATGATCGACCAGAACCGTGATGGCT
TCGTCGAGAAGGAGGATCTGCACGACATGCTGGCCTCGCTGGGCAAGAAC
CCAACGGACGACTATCTCGATGGCATGATGAACGAGGCGCCCGGGCCCAT
CAACTTCACCATGTTCCTCACGCTCTTCGGCGAGCGGCTGCAGGGCACCG
ATCCCGAGGATGTGATCAAGAACGCCTTCGGCTGCTTCGACGAGGAGAAT
ATGGGCGTCCTGCCCGAGGATCGCCTGAGGGAGCTGCTGACCACCATGGG
TGATCGGTTCACAGACGAGGATGTGGACGAGATGTATCGGGAGGCGCCCA
TCAAAAACGGTCTGTTCGACTACCTCGAATTCACGCGCATCCTTAAGCAC
GGTGCCAAGGACAAGGATGAGCAGAAAGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGA
ACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGC
CCATGTGAAACGGGGCGAGAGTTGTCCATATGCCACGTTTAAATCAAACT
GTGAACTCACCCAGGATGCTGAACGAAAACATATCTCATAACCCTTTAGC
ATTAGCAGTTCACCGTACCCGCCCATCTGCAATAATGTGTAGAACTGCGA
ATTCGTCTGATCACTTCGAGCGATGAACGTCCAGCTTGCTCATGCAACGG
TTACAAGGGGAACCTATCCCTATACACA
UFO01130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqh-RE | 1024 | CG3595-RE | 153..679 | 52..578 | 2620 | 99.8 | Plus |
| sqh-RD | 1097 | CG3595-RD | 226..752 | 52..578 | 2620 | 99.8 | Plus |
| sqh-RC | 1403 | CG3595-RC | 532..1058 | 52..578 | 2620 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6223583..6224005 | 474..52 | 2115 | 100 | Minus |
| X | 23542271 | X | 6223406..6223511 | 578..473 | 515 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:38:52 has no hits.
UFO01130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:13 Download gff for
UFO01130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqh-RA | 262..795 | 45..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:08 Download gff for
UFO01130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqh-RB | 215..748 | 45..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:14 Download gff for
UFO01130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqh-RC | 525..1058 | 45..578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:14 Download gff for
UFO01130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6223410..6223511 | 473..574 | 100 | <- | Minus |
| X | 6223585..6224012 | 45..472 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:08 Download gff for
UFO01130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6117443..6117544 | 473..574 | 100 | <- | Minus |
| arm_X | 6117618..6118045 | 45..472 | 99 | | Minus |
