UFO01132.5prime Sequence
1225 bp (1037 high quality bases) assembled on 2008-07-09
> UFO01132.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGGAATCTTTGGGCAGTCGTCGCCATTCGACGCCGACGTGGAAAAG
GCCACCAGCGAAACTAATACCAACGACAACTGGTCTCTGATTTTGGATGT
ATGCGACAAGGTAACGACCAATCCCCGCCTGGCCAAGGATTGCCTGAAGG
CGGTGATGCGCCGCATGGGCCACACCGATCCTCATGTGGTGATGCAGGCG
ATTACGCTTTTGGACGCCCTGTCCAACAACTGCGGAAAACCGCTCCATTT
GGAGGTGGCTTCACGGGATTTCGAGACGGAGTTCCGCCGCCTGTTGGCCA
AAGCACAGCCAAAGGTTTCACTGAAAATGCGCCAAGTGCTGAAGAACTGG
GCTGAAAACGACTATAAGAACGATCGAGAGCTCGACTTGATACCCGCACT
CTATGCCAAGCTGCGCCAAGAGGGATATGATTTCAAGAATCTTGGCGATA
AGACTAGCAAGACTGTTGCCGAAAAGGCCGCCGCCCTGCCCAAAGATCCG
AATGTGGTCAGCAGCCAGCAGGAAGAGGATGACATCGCCAAGGCCATCGA
ATTGTCGCTGAAGGAGAACAAGGGCAGTCCAAAGACTGGGAGTGTAGCAA
GTACCGGCACCGCCAGTGCCTATCCCTCATTGTATCCATCTTTCGCTGGA
ACCGGCTCGAGTGCACCGAGCGCCGAAGCCAGTTCCGCACCAGCGCCAGA
GCCGAGAAAGGTTCGAGCTCTGTACGATTTCGAAGCTGCCGAGGAAAACG
AATTGACCTTCTTTGCCGGCGAGATCATTCATGTGCTGGATGATAGTGAT
CCAAACTGGTGGAAGGGATACAATCAACGCGGCGAGGGTCTCTTCCCCTC
GAACTTTGTCACTGCCGATCTGTCCGTCGATCCCGAGCGGCTGGAAATCA
ATCAGCAGCATAGTCGGCCGCGCAGCCGGCAACGAGAGTTGGAATTCCGC
TGCGGCACTGCAGCAAAAGACTGAAGCGCAGCAGCTGCGCGCAGCTCAGC
TGTGGAGATCGACGAGTCAAAGATCGACGGCTGCTGCATTTGCTGCCAGA
GGCGAATCCCGAAGAATCCTCGCAGAACAGGACGAATGCTGCACTGGACA
GAGTCATCGATGAAACGCGTATCGAAGTCGAGACCTGGAAACGCGCTGCG
CTTGGTAAAACGTGCAAAGACCAGC
UFO01132.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stam-RA | 2854 | CG6521-RA | 300..1405 | 53..1148 | 5145 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10859700..10860470 | 367..1130 | 3325 | 97.8 | Plus |
| 2L | 23513712 | 2L | 10859369..10859647 | 95..373 | 1395 | 100 | Plus |
| 2L | 23513712 | 2L | 10858835..10858877 | 53..95 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:43:33 has no hits.
UFO01132.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:19 Download gff for
UFO01132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stam-RA | 300..1417 | 44..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:10 Download gff for
UFO01132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stam-RA | 292..1409 | 44..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:36 Download gff for
UFO01132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stam-RA | 292..1409 | 44..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:36 Download gff for
UFO01132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10858827..10858877 | 44..95 | 92 | -> | Plus |
| 2L | 10859370..10859647 | 96..373 | 100 | -> | Plus |
| 2L | 10859707..10860480 | 374..1138 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:10 Download gff for
UFO01132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10859707..10860480 | 374..1138 | 97 | -> | Plus |
| arm_2L | 10858827..10858877 | 44..95 | 92 | -> | Plus |
| arm_2L | 10859370..10859647 | 96..373 | 100 | -> | Plus |
