UFO01133.5prime Sequence
1183 bp (1024 high quality bases) assembled on 2008-07-09
> UFO01133.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGCAAACCATCAAGTGCGTGGTCGTCGGCGACGGAGCCGTGGGTAAGA
CATGCCTGCTCATCTCGTATACAACCAACAAGTTCCCGTCGGAGTACGTG
CCCACGGTGTTCGACAACTATGCGGTCACTGTGATGATCGGCGGTGAGCC
CTACACACTGGGCCTGTTCGATACGGCCGGACAGGAGGACTACGATCGGC
TGCGTCCGCTCTCCTATCCGCAGACGGATGTCTTCCTTGTCTGCTTTTCG
GTGGTCAGTCCCAGTTCCTTCGAGAACGTCAAGGAGAAGTGGGTGCCCGA
GATTACACACCATTGCCAAAAGACGCCGTTCCTGCTGGTGGGCACACAGA
TTGATTTGCGCGACGAGAACAGCACGCTGGAGAAGCTGGCCAAGAACAAG
CAGAAGCCCATCACCATGGAGCAGGGCGAGAAGCTGGCCAAGGAGCTGAA
GGCCGTCAAGTACGTGGAGTGCTCGGCCTTGACACAGAAGGGCCTGAAAA
ATGTATTCGACGAGGCCATCCTGGCCGCCCTCGAGCCACCAGAGCCCACA
AAGAAAAGGAAGTGCAAATTCTTAAAAGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAC
CTGAATCGCAGCGGCATCAGCACCTTGTCGCTTGCGTATATATTTGCCCA
TGTGAAACGGGGCGAGAGTGTCATATGCACGTTTAATCAACTGTGAAACT
CACCAGATGCTGAAACGAAAACTATTCTCATACGTTAGAATAGCAGCTTT
CCGTAACGCCATCTGCAATATATGTCACTGCGAATGCTGTAATCACTCGA
GCGAGTAAAACGTTCAGTGTCTCATGGAAGCCT
UFO01133.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc42-RD | 2005 | CG12530-RD | 84..658 | 50..624 | 2875 | 100 | Plus |
| Cdc42-RC | 2078 | CG12530-RC | 157..731 | 50..624 | 2875 | 100 | Plus |
| Cdc42-RA | 1392 | CG12530-RA | 157..731 | 50..624 | 2875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19697956..19698245 | 50..339 | 1450 | 100 | Plus |
| X | 23542271 | X | 19698305..19698591 | 338..624 | 1435 | 100 | Plus |
| 3L | 28110227 | 3L | 1301827..1302347 | 571..51 | 610 | 74.5 | Minus |
| 3L | 28110227 | 3L | 7434278..7434511 | 284..51 | 465 | 79.9 | Minus |
| 3R | 32079331 | 3R | 27638122..27638245 | 208..331 | 200 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:14:30 has no hits.
UFO01133.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:21 Download gff for
UFO01133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc42-RB | 228..809 | 44..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:26 Download gff for
UFO01133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc42-RC | 153..734 | 44..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:53 Download gff for
UFO01133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc42-RA | 153..734 | 44..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:53 Download gff for
UFO01133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19697945..19698245 | 41..339 | 97 | -> | Plus |
| X | 19698307..19698594 | 340..627 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:26 Download gff for
UFO01133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19591978..19592278 | 41..339 | 97 | -> | Plus |
| arm_X | 19592340..19592627 | 340..627 | 99 | == | Plus |
