UFO01134.5prime Sequence
1235 bp (1052 high quality bases) assembled on 2008-07-09
> UFO01134.5prime
GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGCAGGTCTGCGAGGAGGCACTCAAGGTCTTGAGGCAATCCCGTCGTCG
TCCTGTCCGCGGATTACTTCATGTCAGCGGAGACGGCCTGCGAGTGGTGG
ACGACGAGACCAAGGGCCTGATAGTGGACCAGACCATCGAGAAGGTCAGC
TTCTGTGCACCGGATCGCAATCACGAACGCGGCTTCAGCTACATATGCCG
GGATGGAACCACTCGTCGCTGGATGTGTCACGGCTTCCTGGCGTGCAAGG
ACTCCGGCGAGCGATTGTCCCATGCCGTTGGCTGTGCTTTTGCCGTTTGT
CTGGAGCGAAAGCAGCGACGCGACAAGGAGTGCGGCGTGACAATGACCTT
CGACACGAAGAACTCGACCTTCACGCGGACCGGATCCTTCCGTCAGCAGA
CGTTGACGGAGCGTCTGGCAATGGCCACAGTGGGCACAAATGAGCGGAGC
GTAGATGGGCCGGGATCAGCAATGCCGGGTCCTCCGGCGGCCACCGTCAA
GCCTTTCAATCCCTTCGCCATCGAACGGCCCCATGCCACGCCCAACATGC
TGGAGCGTCAGAGTTCGTTCCGTTTGAGCACGATTGGCAGTCAGTCGCCG
TTCAAGCGCCAGATGTCACTGCGCATCAACGATCTTCCGTCCAATGCCGA
TCGTCAGAGGGCCTTCCTGACCGCCGCCGCTGGCAATCCAATGCAGACGC
CACTGCGAAGTGTTTCTCCCATTGCCGAGGTCTCGCCGGCCAAGTCTGCT
GGAGCGGATCCGTTGTCAGCTGCCGCTGTAGCCGCCGATTCTGTGAGCCA
ACTGTGTCAGGAGCTCAGCCAGGTCTCTCGCTCTTGACCCAGACAGACGC
TCTATTAGCCGCCGGGCGAGGATCTAAACTTCAACAACAATCGCAGCATT
AATCAGATCATCATTGCCGCCGAGAAGCAGGGTGCAACATGTACACTCAT
ATGCCCCGCCGACGGCACAAGTGACGCCTCGAGGGCCAGCACCACGCCCA
CATATCAAACGCTTCATTCGCAGTCGCCCCTCCCGATCGAGACAGAGCAT
CGAAACCTCGACGAAACTGCCCATGCGAGCATGGCTGGATCATGGTGGGT
GCGCTAACGTCTCCGCAACACCGTACGGTCCACTTATTGGCAAGTTGGGC
CGAACTCTAGACACCGTGTGCCACAGTGTGGTCAC
UFO01134.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| numb-RD | 4395 | CG3779-RD | 1112..2280 | 50..1214 | 5190 | 97.2 | Plus |
| numb-RB | 2956 | CG3779-RB | 734..1902 | 50..1214 | 5190 | 97.2 | Plus |
| numb-RA | 3309 | CG3779-RA | 1087..2255 | 50..1214 | 5190 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9460937..9461973 | 86..1123 | 4815 | 98.7 | Plus |
| 2L | 23513712 | 2L | 9460717..9460753 | 50..86 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:05 has no hits.
UFO01134.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:16 Download gff for
UFO01134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| numb-RB | 687..1789 | 47..1148 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:55 Download gff for
UFO01134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| numb-RA | 1084..2186 | 47..1148 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:50 Download gff for
UFO01134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| numb-RA | 1084..2186 | 47..1148 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:50 Download gff for
UFO01134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9460714..9460753 | 47..86 | 97 | -> | Plus |
| 2L | 9460938..9462000 | 87..1148 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:55 Download gff for
UFO01134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9460714..9460753 | 47..86 | 97 | -> | Plus |
| arm_2L | 9460938..9462000 | 87..1148 | 98 | | Plus |
