UFO01135.5prime Sequence
1180 bp (1011 high quality bases) assembled on 2008-07-09
> UFO01135.5prime
GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGAAGGTCTGCTGCATTGGCGCTGGTTATGTCGGCGGTCCGACCTGCGC
GGTTATGGCGCTCAAATGCCCCGATATCGTGATAACTCTGGTGGACAAGA
GCTCCGAGCGGATTGCCCAGTGGAATTCGGATAAGTTGCCCATTTACGAG
CCCGGCTTGGATGAGGTGGTGAAGAAGTGCCGCAATGTGAACCTCTTCTT
CTCAACGGACATCGAGACGGCCATCAAGGAGGCGGACCTCATCTTCATCT
CGGTGAACACGCCCACAAAAACCTGCGGCAATGGCAAGGGCCGAGCGGCG
GACCTCAAGTACGTGGAGAGCGCAGCGCGGATGATCGCCGAGATCGCGCA
GTCCAACAAGATTGTGGTGGAGAAGAGCACGGTGCCCGTGCGGGCGGCGG
AGAGCATCATGCACATACTGCGAGCGAACCAGAAGCCGGGCATCCACTAC
GACATACTGTCCAATCCCGAGTTCCTCGCCGAGGGCACCGCCATCAATGA
CCTGCTAAATGCGGATCGTGTGCTGATCGGCGGCGAGGAGACGCCCGAGG
GCCACCAGGCGGTGGAGAAGCTGTCGTGGATCTACGAGCACTGGATACCC
AAGCAGAACATACTCACGACGAACACGTGGAGCAGCGAGCTGTCTAAGCT
GGCGGCCAACGCATTCCTCGCCCAGCGAATCTCCAGCATCAATTCGCTGT
CGGCAGTGTGCGAGGCCACGGGCGCAGATGTTTCCGAGGTGGCGAGGGCC
GTGGGTCTAGACTCTCGCATCGGTTCCAAGTTCCTGCAGGCGTCGGTGGG
CTTCGGCGGCAGTTGCTTTCAGAAGGACATCCTCAATCTGATTTACATCT
GCGAGACCTCAATCTGCCCGAGTGGCCGCCTACTGGCAGCAGTGATCGAC
ATGAATGAGTACCAGAAGCGTCGATTCTCGCAGACATCATCGAGAGTCTG
TCAACACGGTGTCGACAGCGATAGCGATCCTGGGCTTGCTCAGAGATACG
GCGATCGCGCGAACAGCCGCCATTACGTGTGCCAACTCTGCTGAGGAGGC
GCCCGCCTGGATTCTACGATTCGAGTAACCGGACGATCTCATGACCTCGC
ATCAGTTCCGAATTCCCGAAAAGGTAAAAA
UFO01135.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgl-RA | 2275 | CG10072-RA | 209..1308 | 47..1124 | 4870 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6960648..6961328 | 1014..339 | 3140 | 99.1 | Minus |
| 3L | 28110227 | 3L | 6964397..6964550 | 200..47 | 755 | 99.4 | Minus |
| 3L | 28110227 | 3L | 6961810..6961951 | 340..199 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:30 has no hits.
UFO01135.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:17 Download gff for
UFO01135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 250..1352 | 43..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:08 Download gff for
UFO01135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 206..1308 | 43..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:59 Download gff for
UFO01135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 206..1308 | 43..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:59 Download gff for
UFO01135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6964397..6964555 | 42..200 | 97 | <- | Minus |
| 3L | 6960521..6961327 | 340..1124 | 96 | <- | Minus |
| 3L | 6961811..6961949 | 201..339 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:08 Download gff for
UFO01135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6953621..6954427 | 340..1124 | 96 | <- | Minus |
| arm_3L | 6954911..6955049 | 201..339 | 100 | <- | Minus |
| arm_3L | 6957497..6957655 | 42..200 | 97 | <- | Minus |
