UFO01136.5prime Sequence
1236 bp (1051 high quality bases) assembled on 2008-07-09
> UFO01136.5prime
GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGTCTCCAAAAGCGCTAAATGTGCGCGTCACGACAATGGACGCGGAACT
GGAGTTCGCCATTCAGTCGACGACGACGGGCAAGCAATTGTTTGACCAGG
TGGTGAAGACGATCGGCCTGCGAGAGGTTTGGTTCTTTGGACTCCAGTAC
ACCGACTCCAAGGGCGACTCCACATGGATCAAGCTGTACAAAAAGGTGAT
GAACCAGGACGTGAAGAAGGAGAATCCCTTGCAGTTTAGGTTCCGTGCCA
AATTCTATCCCGAGGATGTGGCCGAGGAGCTGATCCAGGACATTACACTG
CGTCTGTTCTACCTGCAGGTGAAGAATGCCATACTGACCGACGAGATCTA
TTGTCCGCCAGAGACATCCGTGCTGCTCGCCTCGTACGCCGTCCAGGCGC
GTCATGGTGACCACAATAAGACCACCCACACAGCCGGCTTTCTGGCCAAC
GATCGCCTGCTGCCGCAGCGCGTCATCGACCAGCACAAGATGTCCAAGGA
CGAGTGGGAGCAGTCGATTATGACCTGGTGGCAGGAGCATCGCAGCATGC
TGCGCGAGGATGCCATGATGGAGTATCTGAAGATCGCCCAAGACCTGGAG
ATGTACGGCGTTAACTACTTTGAGATCCGCAACAAGAAGGGCACGGATCT
TTGGCTGGGCGTAGACGCACTGGGTCTGAACATTTACGAGCAGGACGATA
GGTTGACGCCGAAAATTGGTTTCCCATGGTCCGAGATTCGCAACATTTCG
TTCTCGGAGAAGAAGTTCATCATCAAGCCGATCGACAAGAAGGCTCCGGA
CTTTATGTTCTTTGCGCCACGTGTCCGCATCAACAAGCGCATTCTGGCCC
TCTGCATGGGCAACCACGAGCTGTACATGCGTCGCCGCAGCCGGACACCA
TCGATGTGCAGCAGATGACGCGCAGCGCGCGAGGAGAAGATGCCAAACAG
CAGGAACGTGAGAAGCTGCAGCTGGCGCTGGCCGCACGCGAACGCGCTGA
AAGAAGCAGCAGGAGTACGAGGATCGCTAAAGCAAATGCAGAAGATATGG
AGCGTCGCAGCGCGATCTGCTTGGAGGCGCAGGACTGATCCCCGCTGGAG
AGAAACCACTGAAACACTGCAGCCCCAGATGACTGGACCTGCCCCAAAGG
ACTGTCAGGCCATAGTTCTGTCAAGCCCTCTCTGAA
UFO01136.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moe-RL | 2528 | CG10701-RL | 468..1577 | 51..1150 | 5195 | 98.6 | Plus |
| Moe-RD | 3003 | CG10701-RD | 341..1450 | 51..1150 | 5195 | 98.6 | Plus |
| Moe-RJ | 2401 | CG10701-RJ | 341..1450 | 51..1150 | 5195 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8875094..8875862 | 1008..244 | 3630 | 99.3 | Minus |
| X | 23542271 | X | 8876571..8876753 | 247..65 | 915 | 100 | Minus |
| X | 23542271 | X | 8874770..8874900 | 1135..1008 | 365 | 93.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:51:41 has no hits.
UFO01136.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:52 Download gff for
UFO01136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RG | 215..1333 | 43..1153 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:48 Download gff for
UFO01136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RJ | 334..1452 | 43..1153 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:01 Download gff for
UFO01136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RJ | 334..1452 | 43..1153 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:01 Download gff for
UFO01136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8875094..8875860 | 246..1008 | 99 | <- | Minus |
| X | 8876573..8876752 | 66..245 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:48 Download gff for
UFO01136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8770606..8770785 | 66..245 | 100 | <- | Minus |
| arm_X | 8769127..8769893 | 246..1008 | 99 | <- | Minus |
