UFO01139.5prime Sequence
1210 bp (1057 high quality bases) assembled on 2008-07-09
> UFO01139.5prime
CTGCGGCCGCATAACATCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGAGAACTTAACGCAGAATGTAAACGAAACCAAGGTGGATTTGGGC
CAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGAGCATGCCACCGCCGC
CAAGGAGACCATCATTGACATTCCCGCCGCGTGCTCCAGTTCCTCCAACT
CCTCGTCGTACGACACCGATTGCAGCACGGCGAGCAGCACCTGCTGCACC
CGCCAAGGCGAGCACATCTACATGCAACGCGAGGCCATCCCGGCCACGCC
ACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGTACGTCCACCGCCAGC
ACTGGCCCTGGTTCATCCTAGTGATCTCCATCATTGAGATTGCCATCTTC
GCCTACGACCGCTACACAATGCCCGCCCAGAATTTCGGGCTACCCGTTCC
GATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGGACCGGCGTCTGCAGG
TGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCCAACTGGTTCCACCTG
GGCTTCAATATCGTCATCCAGCTGTTTTTTGGCATTCCCCTGGAGGTGAT
GCACGGCACGGCCAGGATCGGCGTGATCTACATGGCGGGCGTTTTTGCCG
GATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTCTTCCTGGTGGGCGCC
AGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCTGGCCAACATTACACT
GAACTATGCGCACATGAAGAGCGCATCCACGCAACTCGGATCCGTTGTCA
TCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTACACCCAATACTTCGAT
GGAAGCGCCTTCGCCAAGGGTCCCCAGGTGTCGTACATTGCCCACCTGAC
GGGAGCCCTGGCAGGACTAACGATCGGCTTTCTGGTGCTAAAGACTTCGG
TCACCGAGAAGTACGAGCAGCTCATCTGGTGCTAGCGTTGGGCGTCTACT
GTGCTTCACCGTCTTCGCCATCGTTTCAACTGATCACACGTGACCGCCTC
AGCTGATGAGAGCAGTGAAGTGATACCAGCATCTGTTGCACGACTGGGAT
GTCGGCAGCTTTCTGAACATCGTGCCGCGCGGTCCAGGTAATGACTATCT
AATCTAATTATCCTATCCACTAGCTAGGAAATCTGACTAGACATAGGGCT
TGCAATTCTT
UFO01139.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-RB | 3000 | CG1004-RB | 341..1400 | 52..1099 | 4905 | 98.4 | Plus |
| rho-RA | 2531 | CG1004-RA | 341..1400 | 52..1099 | 4905 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1466488..1466907 | 387..806 | 2100 | 100 | Plus |
| 3L | 28110227 | 3L | 1465486..1465822 | 52..388 | 1685 | 100 | Plus |
| 3L | 28110227 | 3L | 1467039..1467261 | 806..1026 | 920 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:42:15 has no hits.
UFO01139.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:11 Download gff for
UFO01139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-RA | 360..1424 | 52..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:46 Download gff for
UFO01139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-RA | 341..1405 | 52..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:02 Download gff for
UFO01139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-RA | 341..1405 | 52..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:02 Download gff for
UFO01139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1465486..1465822 | 52..388 | 100 | -> | Plus |
| 3L | 1466490..1466907 | 389..806 | 100 | -> | Plus |
| 3L | 1467040..1467349 | 807..1103 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:46 Download gff for
UFO01139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1465486..1465822 | 52..388 | 100 | -> | Plus |
| arm_3L | 1466490..1466907 | 389..806 | 100 | -> | Plus |
| arm_3L | 1467040..1467349 | 807..1103 | 94 | | Plus |
