UFO01140.5prime Sequence
1211 bp (1050 high quality bases) assembled on 2008-07-09
> UFO01140.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGAAAATAGCTGTCGAAGGATGTGCACATGGCGAGCTGGAACGAATAT
ACGACACCATAGAGGGCATCGAAAAGGTTGGCGGCACCAAGATCGACTTG
TTATTGTGCTGTGGCGATTTTCAGTCCACCCGGAATCTGGAGGATTTGCA
GACGATGGCTGTACCAAAGAAGTACCTGGATATGTGCTCCTTTTACAAAT
ACTACAGTGGCGAGCTGGTAGCACCAGTGCTGACCATATTCATTGGCGGC
AACCATGAGGCCTCCAATTACCTGCAGGAGCTCCCATACGGCGGTTGGGT
GGCTCCAAATATTTACTACCTTGGTTATGCCGGCGTCGTCAATGTAAACG
GTGTTCGGATAGCTGGAATAAGCGGAATCTTCAAGGGTCACGACTTTTTG
CGCGGCCATCACGAATTCCCTCCGTATACCGATTCCACGTGTCGCAGTGT
CTACCATGTGCGGCAGCTAGAAGTCTTTCGGCTGAAACAAATTTCCGGGC
GAGTTGATATTTTCCTGTCCCACGACTGGCCCACCGGCATCTATGAATAC
GGAAACAAGGCGCAACTGCTCCGCAAGAAACCATTTTTTGCTGCAGACAT
GGAAAGCGGGAAGCTGGGTAGCCAGCCACTGGAGGAGTTACTGAAAGCGG
TCCAACCGGCCTACTGGTTTGCTGCCCATTTGCATTGCAAGTTTGCCGCT
TTGGTGCCGCACAATCACAGCCAGAAGCTAGGAGATGCTGAATCTTCCTC
TTCCAGCAGCAGCAGTGAAGATGAAGACGAGGAAAGGGAGAAGGTAAAGA
AAGCTGCTCCTGTACCTCCACCATCCAAATCTGTTCCCGTGACCAAGTTT
CTGGCTCTCGACAAATGCCTGCCACGTCGTGCTTTCCTGCAAGTGTAGAG
GTACCCAGTGACCCCATCGAAGCACTCCCCGCTGATACGACGCAGAGTGC
TAGCATCTTGCACAGTACAATCACTTGATTCAGTGAGAGATTATTATTAC
CTGCCGAAAAGGCGGGAGAGTTTACGAGCGATCACTTTACCCCACTGAAG
AGACTAGAAGCAGGAACGCAGGTTCGAAACTCAGTTCCGGAACTGAGCCA
TTCAGCCTCGATCCGGGAGCGACTGGATATATAGGACACATGGTTGTGTG
TGATCTACAAC
UFO01140.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ldbr-RB | 1734 | CG7942-RB | 92..1176 | 51..1113 | 4925 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8122163..8122960 | 241..1030 | 3600 | 98.5 | Plus |
| 3L | 28110227 | 3L | 8121918..8122115 | 51..248 | 990 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 1623..1655 | 963..931 | 111 | 81.8 | Minus |
UFO01140.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:22 Download gff for
UFO01140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7942-RB | 77..1169 | 51..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:55 Download gff for
UFO01140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 92..1184 | 51..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:12 Download gff for
UFO01140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 92..1184 | 51..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:12 Download gff for
UFO01140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8121918..8122115 | 51..248 | 100 | -> | Plus |
| 3L | 8122171..8123019 | 249..1079 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:55 Download gff for
UFO01140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8115018..8115215 | 51..248 | 100 | -> | Plus |
| arm_3L | 8115271..8116119 | 249..1079 | 97 | <- | Plus |
