UFO01141.5prime Sequence
1206 bp (1062 high quality bases) assembled on 2008-07-09
> UFO01141.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGTCATCCGCCGCGAAGAAACGGGAGGCGCAGAAGAAGAAGGATGCG
CGCAACAAGAAGATCCAACAGATACCCTCCACCAAGAAGGCCAATGGTGT
CCCGGAACGCGAACTGACCGAGGAGGAGAAGCTGTGCGCCAAGCTGGAGG
AGGAGGCCCGGATCAGTGCGGAGGCCCGATCCTGCACCGGATCGCTGGCG
GTGCATCCGCGTTCCCGTGACGTCAAGATCGCCAACTTTTCGATCACGTT
CTTTGGCTCCGAGCTGCTGCAGGACACCATGCTGGAGTTGAATTGCGGGC
GTCGCTACGGTCTGATTGGCCTGAACGGATGCGGTAAGTCCTCGCTGCTG
GCCGTGCTTGGCGGCAGGGAGGTGCCGGTACCGCCGCACATCGACATCTT
CCACTTGACGCGCGAAATCCCGGCCAGTTCAAAGAGTGCGCTGCAGTGCG
TCATGGAGGTGGATGAGGAGCGCATTAAGCTAGAGAAGCTGGCCGAAGAG
CTGGCCATGAGCGAGGAAGATGATGCTCAGGAGCAGCTGATCGACATCTA
CGAGCGGCTGGACGATATGTCCGCCGATCTGGCAGAGGTCAAGGCGGCCC
GCATCCTTCACGGTCTTGGCTTCGACAAGGCCATGCAACAGAAACAGGCC
AAGGACTTCTCAGGTGGTTGGCGTATGCGTATCGCCTTGGCCCGCGCGCT
GTTTGTGAAGCCCCATCTGCTGTTGCTGGACGAGCCGACGAATCACTTGG
ATTTGGACGCCTGTGTGTGGCTGGAGGAGGAGCTTAAGACATACAAGCGA
ATCCTGGTGCTCATCTCGCACTCGCAGGATTTCCTCAACGGTGTCTGCAC
AAACATCATTCACCTGACGGGCAAGCGACTCAAGTACTATACGGGTAACT
ATGAGCCTTTGTGCGCACACGCATGGAACTGCTGGAAACAGATGAGCAGT
ACACTGGGAACAGGACCAGATTCGCACATGAAGACTACATGCTCGATCGG
TCACGTCGGCAGTGGCGCGAAAGCGCAGTCAAGGAGAAGACGCTGACAGA
ATGTGCTCAGACTCACAAGAAAGGTTCGAAGATAGGTGCTCACTTTACTC
ATCTGGCGCAGGGTGCGGCACACCGTGTATATAGTTCGAACCGGTAAATT
CCGGAT
UFO01141.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-RD | 2565 | CG9281-RD | 243..1356 | 53..1142 | 4900 | 97.1 | Plus |
| CG9281-RC | 3033 | CG9281-RC | 71..1184 | 53..1142 | 4900 | 97.1 | Plus |
| CG9281-RB | 3205 | CG9281-RB | 243..1356 | 53..1142 | 4900 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15708311..15708974 | 716..53 | 3320 | 100 | Minus |
| X | 23542271 | X | 15707912..15708241 | 1034..711 | 1385 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:17 has no hits.
UFO01141.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:12 Download gff for
UFO01141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RC | 71..1134 | 53..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:25 Download gff for
UFO01141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..1306 | 53..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:27 Download gff for
UFO01141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..1306 | 53..1101 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:27 Download gff for
UFO01141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15707836..15708238 | 714..1101 | 94 | <- | Minus |
| X | 15708314..15708974 | 53..713 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:25 Download gff for
UFO01141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15601869..15602271 | 714..1101 | 94 | <- | Minus |
| arm_X | 15602347..15603007 | 53..713 | 100 | | Minus |
