UFO01142.5prime Sequence
1224 bp (1049 high quality bases) assembled on 2008-07-09
> UFO01142.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGATGAAAATGGAGACTGACAAAATAATGGACGAAACCAACTCCAATG
CACAGGCCTTCACAACCACTATGCTGTACGACCCGGTGCGCAAGAAAGAC
TCATCGCCCACCTACCAAACGGAGCGGGAACTCTGCTTTCAGTACTTCAC
CCAGTGGAGCGAGTCGGGCCAGGTGGACTTTGTGGAGCACCTGCTGTCGC
GCATGTGCCACTATCAACACGGACAGATCAATGCCTATCTCAAGCCGATG
CTCCAGCGGGACTTTATCACATTGCTGCCAATCAAGGGTCTGGATCACAT
CGCAGAAAACATTTTGTCGTACTTGGATGCCGAATCGCTCAAATCATCCG
AGCTGGTCTGCAAGGAATGGCTGCGCGTCATTTCCGAGGGCATGCTCTGG
AAGAAGCTCATCGAACGCAAGGTGCGCACAGATTCCTTGTGGCGCGGACT
GGCCGAGCGGCGTAATTGGATGCAGTACCTCTTCAAGCCAAGACCGGGCC
AGACTCAACGGCCACACTCATTCCATCGCGAGTTGTTCCCCAAGATAATG
AATGACATTGACAGCATAGAGAACAACTGGCGGACTGGCCGCCACATGCT
GCGCCGCATCAACTGCCGGTCCGAGAACTCGAAGGGTGTCTATTGTCTGC
AGTACGATGACGGCAAGATTGTCTCCGGACTGAGGGACAACACCATCAAG
ATCTGGGATCGCACGGATTTGCAGTGCGTTAAGACCCTAATGGGCCACAC
TGGATCGGTGCTGTGCCTGCAGTATGACGACAAGGTGATCATCAGTGGCT
CCAGCGACTCCACCGTCCGCGTGTGGGACGTCAATACCGGCGAGATGGTC
AACACCCTTATCCACCACTGCGAGGCGGTGCTGCACTTGCGCTTTAACAA
TGGCATGATGGTTACCTGCTCCAAGGATCGCTCCATCGCCGTCTGGGACA
TGACCTCACCCAGCGAGATTACGCTGCGGCGCGTTCTTGTCGTCACCGTG
CCGCGTCATGTGGTGGACTTTGATGAAAGTACATCGTGTCCGCCAGCGGG
ATCGCACCATCAAGTCTGTCCAATCTAGCTGTGATTCGTGCGCACTTGAA
TGGCCATAGCGTGACTGCCTGGCTACAGATAAGATCCCCTTGGGTGTTCA
GCGGCAGCTCTGAAACAAATCTCT
UFO01142.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slmb-RB | 3492 | CG3412-RB | 492..1663 | 52..1210 | 5350 | 98 | Plus |
| slmb-RC | 2549 | CG3412-RC | 492..1663 | 52..1210 | 5350 | 98 | Plus |
| slmb-RA | 3492 | CG3412-RA | 492..1663 | 52..1210 | 5350 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21121672..21122009 | 1114..782 | 1425 | 98.2 | Minus |
| 3R | 32079331 | 3R | 21122321..21122593 | 604..332 | 1365 | 100 | Minus |
| 3R | 32079331 | 3R | 21125162..21125384 | 331..109 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 21122072..21122251 | 783..604 | 900 | 100 | Minus |
| 3R | 32079331 | 3R | 21126938..21126994 | 108..52 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:31:14 has no hits.
UFO01142.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:27 Download gff for
UFO01142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 480..1667 | 44..1221 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:57 Download gff for
UFO01142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 485..1672 | 44..1221 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:57 Download gff for
UFO01142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 485..1672 | 44..1221 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:57 Download gff for
UFO01142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21121559..21122007 | 784..1221 | 93 | <- | Minus |
| 3R | 21122072..21122251 | 604..783 | 100 | <- | Minus |
| 3R | 21122322..21122593 | 332..603 | 100 | <- | Minus |
| 3R | 21125162..21125384 | 109..331 | 100 | <- | Minus |
| 3R | 21126938..21126998 | 44..108 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:57 Download gff for
UFO01142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16947281..16947729 | 784..1221 | 93 | <- | Minus |
| arm_3R | 16947794..16947973 | 604..783 | 100 | <- | Minus |
| arm_3R | 16948044..16948315 | 332..603 | 100 | <- | Minus |
| arm_3R | 16950884..16951106 | 109..331 | 100 | <- | Minus |
| arm_3R | 16952660..16952720 | 44..108 | 93 | | Minus |
