UFO01144.5prime Sequence
1218 bp (1042 high quality bases) assembled on 2008-07-09
> UFO01144.5prime
GCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATG
TCGCGCAAAATGGCCAAATTCTACAAGCTGGACATCAATCGCACCGAGTG
GGAAATCCCGGAAACATACCAGAACCTGCAACCCGTGGGTCAGGGTGCCT
ACGGCCAGGTCTGCAAGGCCGTGGTCCGCGGAACCAGCACGAAGGTGGCC
ATCAAGAAGCTTGCCAGGCCCTTCCAGTCGGCGGTCCATGCGAAGCGCAC
CTATCGGGAACTGCGGCTGCTGAAGCACATGGATCACGAGAACGTTATTG
GTCTGCTGGATGTCTTTCATCCAGGACAGCCCGCCGATTCGCTGGATCAG
TTCCAGCAAGTGTACATGGTGACCCACTTGATGGACGCCGATCTGAACAA
CATAATACGCACGCAGAAACTGTCTGATGATCATGTCCAGTTTCTGGTCT
ACCAAATCCTGCGCGGTCTGAAGTACATCCACAGCGCTGGGGTCATCCAT
CGTGATCTAAAGCCATCGAACATTGCGGTAAACGAGGACTGTGAGCTTCG
CATCCTGGATTTCGGTTTGGCCCGTCCCGCAGAAAGCGAGATGACCGGAT
ACGTCGCAACGCGATGGTACCGGGCGCCTGAGATCATGCTCAACTGGATG
CACTACAACCAGACGGCGGACATCTGGTCGGTGGGCTGCATCATGGCTGA
GCTGCTGACTGGGCGCACGCTGTTCCCTGGAACCGATCACATCCATCAGC
TGAACCTCATCATGGAAGTGCTGGGCACGCCAGCTGATGAGTTCATGAGC
CGCATCTCCTCGGAGAGCGCTAGAAACTATATTCGTTCACTGCCGGTGAT
GCCGCGCCGCAATTTCCGCGACATCTTCCGCGGTGCCAATCCGCTGGCCA
TCGATTTGCTGGAGAAGATGCTGGAACTTGACGCCGACAAGCGCATACCG
CCGAGCAGCGCTGGCCCATCCGTACATGGAGAAGTACCACGATCCAACCG
ATGAGCAGACCGCCGCGCTCTACGAACAAGAGCTCAAGGAGAACGAGCTG
CCGGTGAAAGTGCGAGAATGTCTTCAGCGAGTGACGGCCTCAGCCCCAGC
TGCTCGCCTGACTTCTGCAGAGCAGCAGCTTCTAGAACATTGTTGCGGGC
AGGTAATGCCATACATATCATAATCCTAGCAATGCTTATAATCCACACAA
CATCTTGAGACTTATGGA
UFO01144.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p38b-RA | 1821 | CG7393-RA | 206..1260 | 44..1090 | 4970 | 98.7 | Plus |
| p38a-RC | 1474 | CG5475-RC | 215..1131 | 72..986 | 1260 | 76.4 | Plus |
| p38a-RB | 1634 | CG5475-RB | 375..1291 | 72..986 | 1260 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13780996..13782010 | 44..1056 | 4855 | 99 | Plus |
| 3R | 32079331 | 3R | 24150965..24151675 | 782..72 | 1215 | 78.1 | Minus |
| 3R | 32079331 | 3R | 24150804..24150862 | 943..885 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:16 has no hits.
UFO01144.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:28 Download gff for
UFO01144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p38b-RA | 196..1269 | 40..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:04 Download gff for
UFO01144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p38b-RA | 203..1276 | 40..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:54 Download gff for
UFO01144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p38b-RA | 203..1276 | 40..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:54 Download gff for
UFO01144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13780993..13782015 | 40..1060 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:04 Download gff for
UFO01144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13780993..13782015 | 40..1060 | 98 | -> | Plus |
