UFO01145.5prime Sequence
1194 bp (1029 high quality bases) assembled on 2008-07-09
> UFO01145.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGTCGTTCTTCGGATCCAACACGTCGCTGGGAGCAACAAGCACGCCG
GCCAAAACAACCGGTGGCCTCTTCGGATCGCCGTTTGGAGGCACAGCTGC
AACCAGCCAGCCAGCACCCGCTTTCGGAGCACAGGCCACATCGACTCCGG
CTTTTGGCGCCCAACCGGCGACTTCTGCCTTCGGAGCAGGTTCCGCCTTT
GGAGCAACCGCTGCAGCCCCGGCTTTTGGAGCCGCCACAGGAACTTCTGC
CTTTGGCGGCTCCGCCTTTGGCAGTACTCCGGCATTTGGTGCGGCGACAA
CCACAACTGCGGGCACGGGTTTGGGAGGAGGCGGTTTCGGCGGATTTGGA
GCAGCTCCGGCAACAAGTCAGGCCGGTCTGTTCGGCGCTCCAGCGACTAG
TGCAGCACCACCAGCTTTTAGCGGATTCGGCCAACAGGCAGCTGCGAGTA
CAGCGCCAGCAAGTGGATTTTCAGGCTTTGGCACAACCACAACGTCGGCA
CCTGCTTTTGGTGGCTTTGGCACCAGCCAGTCCACTGGCTTTGGGGGCGG
AGCCTTCGGATCCACGTTCGGAAAACCAGCGAATACAACAGTTACGCCGG
GATTTGGTGGATTCGGAGGCACCAGTTTTATGCTTGGACAGCCGCAACAG
CAGCCAGCGCCCATATCGGCTGACGAGGCGTTTGCCCAATCCATTCTGAA
TGTATCCATTTTCGGGGATGAACGGGACAAAATAGTGGCCAAATGGAACT
ACTTGCAGGCTACGTGGGGCACTGGGAAAATGTTTTACTCCCAGAGTGCG
GCACCGGTAGACATTACGCCGGAGAACGTGATGTGCCGGGTTCAAGGGCC
ATAGGCTACAGTCGTATGCCGGGCAAGGATAACAGTTGGGACTGGTGGCT
TCTTACTTCTGCAGAGACTCTCAGCTGTCAAGCCACACCAGCAACAAGTG
ATTCAACGCTTCACAGTTTATCGCAGCAAGCCACATGCTTGTCAATAGAT
CATCCAGAGTGAGAACAAAGTGCAAATTGTTATTTATGTCAGAAACTCAC
ATGCTCCACGAGGCAGCGTAACCTGCCACGATTCTCACTACTAATCAGCA
GCTGAACCAGCTCAAATATCTAAGGTTGTGGAAGCCCTTTGCAC
UFO01145.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup54-RA | 2048 | CG8831-RA | 163..1216 | 52..1090 | 4785 | 97.9 | Plus |
| CG43204-RA | 641 | CG43204-RA | 227..282 | 107..52 | 280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12429954..12430460 | 614..108 | 2535 | 100 | Minus |
| 2R | 25286936 | 2R | 12429527..12429894 | 982..615 | 1605 | 98.1 | Minus |
| 2R | 25286936 | 2R | 12430882..12430937 | 107..52 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:13:37 has no hits.
UFO01145.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:13 Download gff for
UFO01145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8831-RA | 159..1129 | 52..1021 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:33 Download gff for
UFO01145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup54-RA | 163..1133 | 52..1021 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:29 Download gff for
UFO01145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup54-RA | 163..1133 | 52..1021 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:29 Download gff for
UFO01145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12429431..12429471 | 982..1021 | 97 | <- | Minus |
| 2R | 12429528..12429894 | 615..981 | 98 | <- | Minus |
| 2R | 12429954..12430460 | 108..614 | 100 | <- | Minus |
| 2R | 12430882..12430937 | 52..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:33 Download gff for
UFO01145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8316936..8316976 | 982..1021 | 97 | <- | Minus |
| arm_2R | 8317033..8317399 | 615..981 | 98 | <- | Minus |
| arm_2R | 8317459..8317965 | 108..614 | 100 | <- | Minus |
| arm_2R | 8318387..8318442 | 52..107 | 100 | | Minus |
