UFO01150.5prime Sequence
1222 bp (1064 high quality bases) assembled on 2008-07-09
> UFO01150.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGATTCGGATACGGACTCGGAGCGGGAGAAGAGCAGCGATCCCAAC
GAGGGACTGCTCAGTAGCGATGACAAGACATTCCACGACGATGATGAACC
GGCGGAGGATTCCTCTCCGGCGGACGATGAGGAGGAGCCCGAGGAGGAGG
AGTGCCTGCTGCCGCAGAAGAAGGCACAGATTCGCTGCGACCAAGACCAG
CCACCTTTGGTGGTCTTGGTACAGCCGTCGGCGGAAGCCATAGAAGTGCG
CCAAGAAATCGATGATACCAATCCGGTGGCAGTAGCTGCCAAAGCTAGCG
ATATGGATGGGGATTCGCAACTGGAGGTGATGGAACACCAAATGGAGACC
GTAACCGAACCGGATCCCGAGCCTCCGAAGTGTCCAACATCCCTGCGCGA
TAGTGTCCGCGAGTCCGTTGAATGCTTCTATTCCGCCCAGGATCTTCTCG
AGTACGGACACATGCTGTCCTCCACTTCGATGGTCCGAACACCGGATGTG
GAGTCTGGCTACTTTGAGAAGTCCGAGAGCGATGCTTCGCGCGACGAGTG
GGAGGGTCCGTCGTCGTCATCCTCGGGCGCAGCCCGTTGTCGCCTTCTCT
CCGGCATTTCCGGACTCTCCGTCTCTTCGTCGAGTCGCCACAGTGCCGAG
GGTTTGCGCATGGAACTGAGCCGATTTCGCACCATGATCGAGACTCTCGA
GCGGGAAAGTCTCGAGAAATCGCAATCGGAGCTGCAGTTGAAGGCCAAGA
GCAAGGCGAAGCCAAAGCCCAAGCAGAGATCCCACGTACAGGATGCGGCT
GGGGAAAGTGGTTCGGAACAGGGTTCCGAGAGGGGCTTCTGGTCAACGAT
CTTCGGCCAGGCGGGTCTGGCGATCAGTCAGGATGAGGAGGAGCGCATTG
CGGACATACAGAAAGCTCATCGGGCTCTCGAGCTGCTCGAGGACTACCAC
GCGAGACTTTCGGAGCCGCAGGATCGGGCGCTGCGTATTGCAATCGACGC
GTTATACGCATATTTCAGTCCTCGCTTGTTCAGGGGCTGTAGATATACAA
GATTCTATGATGACTTATGGATGACTCGAGAGCAACCACCAAGGACCGCC
GGACCTGGCAATGCACGAATGGAAGGGATGTGCCAGGGCAGACTCAAGTA
TAGCCCGTGAGTATTGTTATTT
UFO01150.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlg1-RM | 3196 | CG1725-RM | 47..1165 | 53..1161 | 5160 | 98 | Plus |
| dlg1-RF | 2554 | CG1725-RF | 47..1165 | 53..1161 | 5160 | 98 | Plus |
| dlg1-RU | 2524 | CG536-RU | 830..1038 | 963..1161 | 610 | 89.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11375809..11376718 | 53..962 | 4550 | 100 | Plus |
| X | 23542271 | X | 11376842..11376945 | 963..1065 | 470 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:08:57 has no hits.
UFO01150.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:14 Download gff for
UFO01150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RF | 44..1149 | 47..1146 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:44 Download gff for
UFO01150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RF | 44..1149 | 47..1146 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:11 Download gff for
UFO01150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RF | 44..1149 | 47..1146 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:11 Download gff for
UFO01150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11375806..11376718 | 47..962 | 99 | -> | Plus |
| X | 11376842..11376973 | 963..1092 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:44 Download gff for
UFO01150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11269839..11270751 | 47..962 | 99 | -> | Plus |
| arm_X | 11270875..11271006 | 963..1092 | 93 | -> | Plus |
