UFO01152.5prime Sequence
1186 bp (1044 high quality bases) assembled on 2008-07-09
> UFO01152.5prime
GGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACAT
GTCATGGGAGAGCATTAACTCCAAGGATCTCCTTAGCATCCCACCAAGCC
AGAATCTGTCTGCAACACGTTTACTTACATCACCTGATGGATCTCGTTAC
CTATTGGAAAATTCAAGCGACTTGTGTCACTTAGATGAGAGTTTTTCGCG
GTTGGCGGGATATGGATCTAGTCCAGATGTAGGATCCCGTTCGGTATGGG
CTAGCCAGGCGCTATTACGATCAGGTTCTGTTATCAGTTGCTTTTTGTCC
TGCCAGCAAAGCCTAAGACAGTACATAGCTAAACGGAAGATCGAGCGAGG
ACGACGGCTATATGAACAAAACAATCAAACGGAGGCCGTACGTACTTGGC
GTAGTGCACTGAAAGGGACGTGCCAAAGAGAGGACTGCTTTCAGCTACTA
GGATATTTGTATCAGGCACATATGGACTGGGGAAAATTTCGTGAGGCAAT
AGAATTCAGTCATCAGCAGCTCGGAATTTCAGAGGAGCTTGATTCGCCAA
ATATGAGAGCCGAGACGTACTTAAATCTCAGCAGGGCACACGCCAGCTTG
GGAGGCTTAGAGCGATCACTGAGTTATGCCAGGCACTCACTTTACAATGA
GTGCGGCACTAAATGCAGAAGTGGACTTGTCCATTTGACGGTTGCACGTG
TATACCTAGAAATGGGTGGGTTCTCTAGGGCTTTGGAGGGTTTGCAGGGT
GCCTACAAAATTGCTACAGCTATTGGAGATCCATCACTGGAGTTACAAGT
GTATGTCGCGCTTTCTGAGCTTTTCGGACGCCTTCAGGATAACGATAAAA
GTGCAACATACGCTTCTAAAGCCTACGACTTATCACGATCCCTGCAACTC
GGTGACCTAAACTCATGCCACCATAGAGCAGCTCTATGCGAATGGCGGTT
TCTCTCGAAAGCAGGGTGAGCTTGAGATGCACAAGAATATGTAAGAGCCA
CGAAGCTTCCCTATTTCTGAAAACAGCGACTACAACGAGAGTATCGCGTC
ATGGGCGAAATATACGAAATAAAATGACATTGATCGTGCCATCGCATATG
GAACAAGCTATGTACATCGCAGCCTAGGAATCGATGCATGAAGCATGAAT
GAACACCTCGTGCTGGGAAACCTCCGATCTCGGACC
UFO01152.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1909-RB | 2374 | CG1909-RB | 155..1244 | 48..1119 | 4825 | 97.3 | Plus |
| CG1909-RA | 2401 | CG1909-RA | 182..1271 | 48..1119 | 4825 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 585297..585766 | 524..990 | 2185 | 99.1 | Plus |
| 4 | 1348131 | 4 | 584988..585174 | 338..524 | 935 | 100 | Plus |
| 4 | 1348131 | 4 | 584761..584931 | 169..339 | 855 | 100 | Plus |
| 4 | 1348131 | 4 | 583933..584018 | 84..169 | 430 | 100 | Plus |
| 4 | 1348131 | 4 | 583825..583863 | 48..86 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:40:19 has no hits.
UFO01152.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:34 Download gff for
UFO01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1909-RB | 110..1218 | 41..1128 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:06 Download gff for
UFO01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1909-RA | 174..1282 | 41..1128 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:05 Download gff for
UFO01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1909-RA | 174..1282 | 41..1128 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:05 Download gff for
UFO01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 583817..583863 | 41..86 | 93 | -> | Plus |
| 4 | 583936..584018 | 87..169 | 100 | -> | Plus |
| 4 | 584762..584931 | 170..339 | 100 | -> | Plus |
| 4 | 584990..585174 | 340..524 | 100 | -> | Plus |
| 4 | 585298..585772 | 525..995 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:06 Download gff for
UFO01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 604443..604489 | 41..86 | 93 | -> | Plus |
| arm_4 | 604562..604644 | 87..169 | 100 | -> | Plus |
| arm_4 | 605388..605557 | 170..339 | 100 | -> | Plus |
| arm_4 | 605616..605800 | 340..524 | 100 | -> | Plus |
| arm_4 | 605924..606398 | 525..995 | 98 | -> | Plus |
