UFO01153.5prime Sequence
1185 bp (1048 high quality bases) assembled on 2008-07-09
> UFO01153.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGTGGAAGGCAAGTGCCGGTCACCAGATTCAGGCCACCAGTGCAGCC
TCCGCGGAGGACGACGACTGGGAGACGGATCCGGACTTCGTGAACGATGT
CAGTGAGCAGGAGCAGCGCTGGGGATCAAAGACGATCGACGGCAGCGGTC
GCACAGCAGGCACCATCGACATGGACAAGCTGCGCGAGGAGACGGAGCAG
GCCGATCTGGACAAGAAGAAGCAGCTGCTGAAGGATCAGAACGCAGGATA
CGGATACGGGGGCAAGTTTGGCGTTGAGAAGGACCGCATGGACAAGTCGG
CTGTGGGTCATGACTACCAGGGCAAGGTGGGAAAGCACGCCTCGCAGAAG
GACTACAGCGATGGTTTTGGGGGAAAGTTCGGAGTGCAAGAGGATCGCAA
GGACAAGTCTGCCGTGGGCTGGGACCACGTCGAAAAGGTCGAGAAGCACG
CCTCCCAGAAGGATTACGCCACCGGCTTCGGAGGCAAATTTGGAGTGCAG
TCCGATCGGGTGGATAAATCCGCCGTGGGCTGGGATCACATCGAGAAGGT
GGAGAAGCACGAGTCTCAGAAGGATTACTCCAAGGGCTTTGGCGGCAAGT
TTGGCGTTCAGGAGGACCGAAAGGACAAGTCCGCGGTGGGATGGGACCAC
AAAGAGGCTCCGCAGAAGCACGCCAGCCAGGTGGACCACAAGGTCAAGCC
AGTCATCGAAGGTGCCAAGCCTTCCAATTTGCGTGCCAAGTTCGAGAATC
TGGCTAAAAACTCCGAGGAGGAGTCACGTAAGCGGGCCGAGGAACAGAAA
CGTCTCCGTGAGGCCAAGGACAAGCGGGATCGGGAGGAAGCCGCCAAGAA
GACTGTGGCCGAGACACTCCTCGTACCTCGACGGAAGCACCGTCTCCAAA
GGGCAGCAGGCGGCCATCCAGACAGGTCGACGGTGGCATTGGCAATGCTA
TCAGTGCATTTACAGATGCAGTCGCTGTTTCTGAACCCCTCCAGCACGAA
GACCCATATCATCCCAGGCGCAGCTGTAAATAGATAGAGCAGGAGGGACA
CGCAGTACAATCAGCTGCGTGCTCCTATTCGACTATCGATCGAGCGAACG
CTCAAGGCCAGGTGCAGCTCCTACACACAGAATTC
UFO01153.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cortactin-RD | 2388 | CG3637-RD | 163..1198 | 53..1074 | 4835 | 98.6 | Plus |
| Cortactin-RC | 2391 | CG3637-RC | 166..1201 | 53..1074 | 4835 | 98.6 | Plus |
| Cortactin-RB | 2419 | CG3637-RB | 194..1229 | 53..1074 | 4835 | 98.6 | Plus |
| Cortactin-RD | 2388 | CG3637-RD | 418..700 | 419..701 | 305 | 74.3 | Plus |
| Cortactin-RD | 2388 | CG3637-RD | 529..811 | 308..590 | 305 | 74.3 | Plus |
| Cortactin-RC | 2391 | CG3637-RC | 532..814 | 308..590 | 305 | 74.3 | Plus |
| Cortactin-RC | 2391 | CG3637-RC | 421..703 | 419..701 | 305 | 74.3 | Plus |
| Cortactin-RD | 2388 | CG3637-RD | 484..588 | 596..700 | 195 | 79 | Plus |
| Cortactin-RD | 2388 | CG3637-RD | 706..810 | 374..478 | 195 | 79 | Plus |
| Cortactin-RC | 2391 | CG3637-RC | 487..591 | 596..700 | 195 | 79 | Plus |
| Cortactin-RC | 2391 | CG3637-RC | 709..813 | 374..478 | 195 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21063426..21063829 | 623..220 | 2020 | 100 | Minus |
| 3R | 32079331 | 3R | 21062900..21063335 | 1050..623 | 1820 | 97.7 | Minus |
| 3R | 32079331 | 3R | 21063898..21064064 | 219..53 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 21063459..21063741 | 701..419 | 305 | 73.9 | Minus |
| 3R | 32079331 | 3R | 21063426..21063630 | 512..308 | 215 | 73.7 | Minus |
| 3R | 32079331 | 3R | 21063571..21063675 | 700..596 | 195 | 79 | Minus |
Blast to na_te.dros performed 2014-11-28 22:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5609..5663 | 106..160 | 122 | 69.1 | Plus |
UFO01153.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:24 Download gff for
UFO01153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cortactin-RA | 212..1240 | 50..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:12 Download gff for
UFO01153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cortactin-RB | 192..1220 | 50..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:35 Download gff for
UFO01153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cortactin-RB | 192..1220 | 50..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:35 Download gff for
UFO01153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21062900..21063334 | 624..1050 | 97 | <- | Minus |
| 3R | 21063426..21063829 | 220..623 | 100 | <- | Minus |
| 3R | 21063898..21064066 | 50..219 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:12 Download gff for
UFO01153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16888622..16889056 | 624..1050 | 97 | <- | Minus |
| arm_3R | 16889148..16889551 | 220..623 | 100 | <- | Minus |
| arm_3R | 16889620..16889788 | 50..219 | 99 | | Minus |
