UFO01154.5prime Sequence
1172 bp (1009 high quality bases) assembled on 2008-07-09
> UFO01154.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGAGGAGCGTCGAGGAGATCAAAGCGGAGTACCCGCTGCACTGGCAC
ATCTGGCACAACGAACTGGAGCAGCTGCAGGCGGCCATCGACCAGAACGA
TAAGGAGAAAATCGATCCCCGCGGCCGGACGCCACTGATGCTGGCTGTGA
GATTGGCCAATTTGCCATGCGTTAAATGCCTTCTGGCGGCCAAATGCAAT
GCGACCTATGAGTACGAAGGCTGGTCGATTGTCCAGGAAGCGGTCTGCAC
CGGCGATGTGGACATACTGACGGCCATCATCGAAGTCCGGGATCTCCAGC
GTCATGTCCAGCGGGTTACGCATGTGCCTAAGCTGCTGCAGCACCTATTG
GACGCACCAGATTTCTACATCGAGATGAAGTGGGAATTCACCTCCTGGGT
GCCTCTGATGTCGCGTCTCTGTCCCAGCGACACCTACAAGGTCTACAAGC
GGGGAGCCAACGTCCGGATAGATACCACCCTGCTGGGCTTCGACAACAAC
ACCTGGCAACGGGGCAATCGCTCTTACATCTTCAAGGGGGCCAAAGAAAC
TGCCACGATGATCGAGATCGATCACGATACAAACGAAGTAATGGTGGAGG
AGATGAGCAGCGATATCGGTGATATTGTGGCCATTCCACCAGCCTTGGGC
ACCGTGAGGGCGCGCCTCAATGCCCCGGTGATCACGAACAACATCGAGAT
GGACAAGATTAGCTTCGAGCGCAACAAGTGCGGCATATGGGGATGGCGTA
GCGAGAAATCTGAGATGATCAACGGCTACAACTGCAAGGTGTATGGGGCC
AGCAACGTGGAGTTTGTTACAAAGACGCGAATGGATCACCTTAGCGAGGA
GCAAATTAAGACAGACAGCGAGGACTCACTGCATAGCCTGCTGGGATTGC
TGATGAGATTATGTGTCACCCGCTGATGCTGCTGCGCACTAAAGATCGTA
CACATCGCCCCGATGAGAGCTCATCGCTGGAGTGAAATGTGCGAACTCAC
AGCCTGATCAGCACGGAGCTCGCGGGTGCTCGACAGTACTCAGTCTCTGT
AATCCGGAGAATTACTCAGAGTGAACTCAGAGGATTGGGCTCGACTGGAC
AAAGGTCAGCTTAGCCACCTAT
UFO01154.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RE | 2823 | CG15118-RE | 127..1094 | 53..1012 | 4640 | 99.2 | Plus |
| CG15118-RB | 2528 | CG15118-RB | 127..1094 | 53..1012 | 4640 | 99.2 | Plus |
| CG15118-RA | 2475 | CG15118-RA | 74..1041 | 53..1012 | 4640 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19135939..19136255 | 910..594 | 1585 | 100 | Minus |
| 2R | 25286936 | 2R | 19136323..19136637 | 593..279 | 1575 | 100 | Minus |
| 2R | 25286936 | 2R | 19136695..19136830 | 278..143 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 19136951..19137043 | 145..53 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 19135700..19135776 | 986..913 | 235 | 96.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:37 has no hits.
UFO01154.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:17 Download gff for
UFO01154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RB | 116..1099 | 45..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:22 Download gff for
UFO01154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 65..1048 | 45..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:31 Download gff for
UFO01154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 65..1048 | 45..1019 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:31 Download gff for
UFO01154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19136951..19137047 | 45..145 | 96 | | Minus |
| 2R | 19135685..19135780 | 911..999 | 92 | <- | Minus |
| 2R | 19135939..19136255 | 594..910 | 100 | <- | Minus |
| 2R | 19136323..19136637 | 279..593 | 100 | <- | Minus |
| 2R | 19136695..19136827 | 146..278 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:22 Download gff for
UFO01154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15024456..15024552 | 45..145 | 96 | | Minus |
| arm_2R | 15023190..15023285 | 911..999 | 92 | <- | Minus |
| arm_2R | 15023444..15023760 | 594..910 | 100 | <- | Minus |
| arm_2R | 15023828..15024142 | 279..593 | 100 | <- | Minus |
| arm_2R | 15024200..15024332 | 146..278 | 100 | <- | Minus |
