UFO01155.5prime Sequence
1189 bp (1033 high quality bases) assembled on 2008-07-09
> UFO01155.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGGCGACGGTCAGCAGACTTTGGCTAGTGCTGCCTCGAATCCCGGG
ATATATGCATCTTCAACGGCAAACTCAGCCGCGGTATCCATTAGCGAATT
AATGAAACCAGGACAAACGGCGGTGGAAAAGCGAGTTGAAGCCTGGAATC
CGTTCGAAGAGGAGCAGCCTTTCAGCCAGATGACTGAGGATCACATCTTT
GAGGCGGAGTTCGACAAGATACGACAGAGAGGCAGTCAAGGAAGCATCAC
AGCAAAATCGGCATCCACAACTTCCACGCTAACACCAACGGAGCAGATTC
CCTCTGCGGTTGTGGCTCCTGTTACAGCTGCTCCTGGTGCAGTGCCTCCT
CCGCCGATTGCTGCCGCTGTGTCTCCTTACCCGTCGCAGGTCTCCGAGGA
TCCATTCGGATCGGCGCCATTCAGTTTGCCACCCGGACTGCGCGAGAAGG
CGAGCTCGCTGCGCAAAACCGGAGCGAAATTCATCGGCGTTTCATCTGGT
GGAACAGGAGGCGGAGTGGCCACGCCTATCGGCTTGGTAGCGGGAGGAGC
AAACACCGCCACCTCTTCCAACTCATCCAAGTGGATGCTCTCCCCCACCC
TGGAGGTTTCCAGCGAAGAGAAGACCTCGCTTATCAGTAAACTCAAAACA
GACTCAGAATGTGGAATTCCAGGCGCTGTTGGAGGAGCTGGAGAAGGTGT
CTCTGGTTATGTTAAGCTACCTGTAGAAGATCGCAACAAGTACGAGAAGC
TGCGCAGCAAAGATCAGCCGACTTCCGATGACTCCGATTCCGAGGCTTCG
GAGTTCTTTCAACAAGACAGCGATGAAGGAGGTGGGGGCATCTTTAGGCA
AATGCAGATGGTGACAAGCAATTTGCCGGAAACCATCCATAAAATCCAAC
AGGTTGCCTATCACAAGTGACAGACAGCTCATCTGCAATGTGAAGACTTC
GCGATAGACAAGAAACCACACAGCTGCCCATCAGCGGCCAACACTAAATC
TCATGCTGCGGGTAGCTGCCAAGCTGAAAAGCTGCAGCGCGATCGACGTG
ATCGATCGATTGCATGACTGCGGCCAAGAATATGTATCGTTGACGAATCT
GCAGACCAGCCAGCACGTTGTCTGCCACGAATGGGAGTG
UFO01155.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nak-RD | 5364 | CG10637-RD | 1943..2995 | 52..1085 | 4800 | 98.2 | Plus |
| Nak-RA | 5196 | CG10637-RA | 1943..2995 | 52..1085 | 4800 | 98.2 | Plus |
| Nak-RE | 4280 | CG10637-RE | 1943..2415 | 52..524 | 2365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18960238..18960682 | 967..523 | 2225 | 100 | Minus |
| 2L | 23513712 | 2L | 18963170..18963412 | 294..52 | 1215 | 100 | Minus |
| 2L | 23513712 | 2L | 18962885..18963115 | 524..294 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:44:33 has no hits.
UFO01155.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:25 Download gff for
UFO01155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RB | 85..1137 | 52..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:11 Download gff for
UFO01155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RA | 1943..2995 | 52..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:43 Download gff for
UFO01155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RA | 1943..2995 | 52..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:43 Download gff for
UFO01155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18963171..18963412 | 52..293 | 100 | | Minus |
| 2L | 18960101..18960680 | 525..1085 | 96 | <- | Minus |
| 2L | 18962885..18963115 | 294..524 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:11 Download gff for
UFO01155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18960101..18960680 | 525..1085 | 96 | <- | Minus |
| arm_2L | 18962885..18963115 | 294..524 | 100 | <- | Minus |
| arm_2L | 18963171..18963412 | 52..293 | 100 | | Minus |
