UFO01157.5prime Sequence
1208 bp (1007 high quality bases) assembled on 2008-07-09
> UFO01157.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGTCGAAGAACAAGCTGAATCTGGTGCTGCCGCCGGTAAATACGG
AGGCAACTGTTGCCCCCGCCACAGTGGCGCCGACGCCGCCATTCAAAACC
CCCTCGGGCACAGACACACACAGTTTGCTGGGGAAGCCCAAGACGAGCAT
CGATGCGCTGACAGAGACGCTGGAGGGTCTGGACATGGGCGACACGGAAC
GCAAGCGGATCAAGATGTTCCTCAGCCAGAAGGAGAAGATCGGCGAGCTG
TCCGACGAGGATCTGGAGAAGCTGGGCGAGCTCGGATCGGGCAATGGCGG
CGTGGTGATGAAGGTCCGGCACACGCACACACACCTGATCATGGCCAGGA
AACTGATCCATCTGGAGGTGAAGCCGGCGATCAAGAAACAGATCCTGCGC
GAACTGAAAGTCCTGCACGAATGTAATTTCCCGCACATTGTCGGTTTCTA
CGGCGCCTTCTACAGCGACGGCGAGATCAGTATCTGCATGGAGTATATGG
ACGGTGGATCACTTGACCTGATCCTCAAGCGGGCCGGTCGAATACCAGAG
TCCATTCTCGGCAGGATCACGCTGGCGGTGCTCAAGGGCTTGAGCTATCT
GCGCGACAATCACGCCATCATCCACCGTGACGTGAAGCCGAGCAATATCC
TCGTCAATAGCAGCGGCGAGATCAAGATCTGTGATTTCGGCGTCTCCGGT
CAACTGATCGACTCGATGGCCAACTCCTTTGTGGGCACCCGTAGCTATAT
GTCGCCGGAGCGATTGCAGGGCACCCACTACTCCGTGCAGTCGGACATCT
GGTCGTTGGGTCTGTCGCTGGTGGAGATGGCCATCGGCATGTACCCCATC
CCGGCCGCCAAACACCGCCACCCTGGAGTCGATATTCGCCGACAATGCGG
AGGAGAGCGGCCAGCCGACGGACGAGCCCAGGGCAATGGCCCATTCTTCG
AGCTGCTGGATTATTATTGTAAACGACCGCCGCCCAAGCTAGAAGCACAG
AATCTTCTTCCACGAGTCAGACTCGTGACATCTGCTGAGAACAGGCGACA
GGGCGATCTCCAGACTTGCTGATCATCAGGATACGCAGGCGAATAGAGAG
TGCATTATTCGGCTGGAGTGCAAGAACAATGGAAACTGCACCTCAAATCG
AAGTCCGG
UFO01157.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsor1-RA | 1799 | CG15793-RA | 458..1457 | 55..1058 | 4830 | 99.1 | Plus |
| Dsor1-RB | 1503 | CG15793-RB | 171..1161 | 55..1058 | 4685 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9248542..9249181 | 165..804 | 3200 | 100 | Plus |
| X | 23542271 | X | 9249374..9249610 | 804..1043 | 975 | 97.5 | Plus |
| X | 23542271 | X | 9247799..9247908 | 55..164 | 535 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:40:36 has no hits.
UFO01157.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:35 Download gff for
UFO01157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsor1-RA | 2..1013 | 53..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:12 Download gff for
UFO01157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsor1-RA | 449..1466 | 44..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:13 Download gff for
UFO01157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsor1-RA | 449..1466 | 44..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:13 Download gff for
UFO01157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9247790..9247908 | 44..164 | 95 | -> | Plus |
| X | 9248542..9249181 | 165..804 | 100 | -> | Plus |
| X | 9249375..9249617 | 805..1050 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:12 Download gff for
UFO01157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9141823..9141941 | 44..164 | 95 | -> | Plus |
| arm_X | 9142575..9143214 | 165..804 | 100 | -> | Plus |
| arm_X | 9143408..9143650 | 805..1050 | 97 | -> | Plus |
