UFO01160.5prime Sequence
1233 bp (1008 high quality bases) assembled on 2008-07-09
> UFO01160.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGAGCCCATTGACATTGCGCGTCTGGAGGAGGCGGTCGTGTCGTTC
TACCGCTCGAACTCGCAGAACCAGGCGATCACCCATGAATGGCTTACCGA
TGCGGAGGCCAGTCCACAGGCCTGGCAGTTTTCCTGGCAGCTAATGCAGC
TCGGCAAGAGTCAGGAGGTGCAGTTCTTCGGCGCCATCACGCTGCACTCC
AAGCTTATGAAGCACTGGCACGAAGTGCCGCCAGAGAATCGCGAGGAGTT
AAAGCAAAAGATACTCGAATCCATCGTTCGCTTCGCTGGCGGACCGAAGA
TCGTCCTCAATCGGTTGTGCATCTCGCTGGGCGCTTACATCGTTCACATG
CTGGGCGAATGGCCCGGCGCCATCGAGGAGGTGATCAACACGTTTCAGAA
TCAACGGATGCCAAATGTCAGCGCCGATGTGCAATTGTGGATCATGCTGG
AGGTGCTGACCGCCATTCCCGAGGAAGCGCAGGTCATACATACGTCTGTC
AAGCGGGTTGTTCTGCGCGCCGAGATCGCCAAGCGAGTGCAGTTGGTCAT
TCACACCGTTGAGCGATATCTGAAGCTGCAAATGAACCGCGTGTGGGATG
CCGAGGCGTACAGTAACATGAACAGGGCCGTTAAGTGCGTCGGCACCTGG
ATCAAAAACATCGGCTACACCATTGAGGGCTGCGTCACCATCACCGCCGT
GCTCCTGGAAGTGGTGCACAAGTGCTATTGGCCCTGCATACACGCCGGCG
ACGGCTGCATGACCGCCGATGAGAACGAACTGGCCGAGTCCTGTCTGAAG
ACCATGGTGAACATTATCATCCAGCCAGACTGCCACAACTATCCAAAGAC
GGCATTTGTGCTTATAAAAATGTTCCTGGACTCGCTATCCGAAATCACAA
AGACGGAATGGAAGAAGGGAGAACGAACAACGAGGACATTATCGTACATA
TCTACATGCTGTTCGTCTCTCGGTGGACGACATTCGACGCCTGTTTGCTC
AGCGCATCACGTCCGCGAATCCGAATGTCTATCCTAAGGGCATCGCATCG
GTCAAGGAAATCCTCCACTGCCACGGAACAGCTGGGCATTAACCGGTGGG
AAGAGATCCTGGCACCAATGACTGGCGTTTGAATTGCCTGCAAGACAAAG
TGTCTGCCCAAGAGCTCTACACGACGAGTGAGG
UFO01160.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cdm-RB | 3691 | CG7212-RB | 132..1229 | 51..1149 | 5050 | 97.9 | Plus |
| cdm-RA | 3253 | CG7212-RA | 132..1229 | 51..1149 | 5050 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18182596..18183094 | 705..207 | 2495 | 100 | Minus |
| 3R | 32079331 | 3R | 18182167..18182533 | 1073..706 | 1495 | 97.3 | Minus |
| 3R | 32079331 | 3R | 18183191..18183348 | 208..51 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:14:03 has no hits.
UFO01160.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:30 Download gff for
UFO01160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdm-RA | 126..1229 | 45..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:10 Download gff for
UFO01160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdm-RA | 126..1229 | 45..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:42 Download gff for
UFO01160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdm-RA | 126..1229 | 45..1149 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:42 Download gff for
UFO01160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18182091..18182533 | 706..1149 | 94 | <- | Minus |
| 3R | 18182596..18183092 | 209..705 | 100 | <- | Minus |
| 3R | 18183191..18183354 | 45..208 | 98 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:10 Download gff for
UFO01160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14007813..14008255 | 706..1149 | 94 | <- | Minus |
| arm_3R | 14008318..14008814 | 209..705 | 100 | <- | Minus |
| arm_3R | 14008913..14009076 | 45..208 | 98 | == | Minus |
