UFO01161.5prime Sequence
1194 bp (1025 high quality bases) assembled on 2008-07-09
> UFO01161.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGTCGCTCAAGCCCAAAATAGTGGAGTTTGTCGATGTTTGGCCGCGC
CTGCGCTGCATCGCCGAGTCGGTGATAACGCTCACCAAAGTGGAGCGCTC
GGTGTGGAATACTAGCTTCAGCGACGTTTACACACTGTGCGTGGCGCAGC
CGGAACCGATGGCTGATCGTCTTTATGGCGAAACAAAACACTTTCTTGAG
CAGCACGTCCAGGAGATGCTGGCCAAAAAGGTGCTGATCGAGGGAGAATG
CTCCCATTCCAATGGTGGCCCAGACCTTCTCCAGCGTTACTACATCACCT
GGATGGAATATAGCCAGGGTATCAAGTATCTGCACCAATTGTACATCTAC
CTGAATCAACAACACATCAAGAAACAAAAGATTACCGATACGGAATCGTT
CTACGGTAATCTGTCAAGCGATGCTGCGGAGCAGATGGAGATTGGCGAGC
TAGGTCTAGACATTTGGCGCCTGTATATGATTGAGTACTTGTCCAGCGAA
CTGGTCCGTCACATACTCGAGGGCATTGCCGCAGACAGAGCTAGCAATGG
CACCTTGGATCACCATCGCGTGCAAATTATCAACGGAGTGATACACAGCT
TCGTGGAGGTACAGGACTATAAGAAAACAGGCTCGCTTAAGCTCTACCAG
GAACTCTTTGAAGGCCCCATGCTGGAGGCCAGTGGCGCCTACTACACAGA
CGAGGCTAACAAGTTGCTCCATCGGTGCTCAGTGTCGGAGTACATGCAGG
AGGTTATCCGGATACTGGAATATGAAAGCCGGAGAGCCCAAAAGTTTTTA
CACGTCAGTTCCCTGCCAAAACTACGTAAAGAGTGCGAGGAGAAGTTTAT
TAACGATCGTTTGGGCTTCATCTACTCGAGTGCCGCGAAATGGTTTCAGA
GGAGCGGCGCCAGACTTACGCAACATGTACGTCGTACTAAAGCCCATACC
CGATAATCTCAAGTCTGAGCCTCATACACTTCCTCGATCACATCAAAAGG
TGAGTCTGCAAACCGTATCTGCCCTGAGGCGAAACATCATATGCTTCGTA
AGAATTGTGGAGTAATCCAGTACAGAGCTGATCGCTAGCCTCGAACGATT
CCTATCTGAAGCATGACAGGCGGTGCTCGACTTCATTCCGCACC
UFO01161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul2-RB | 2831 | CG1512-RB | 177..1244 | 50..1105 | 4950 | 98.3 | Plus |
| Cul2-RA | 3426 | CG1512-RA | 284..1351 | 50..1105 | 4950 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21660123..21660808 | 397..1077 | 3050 | 98 | Plus |
| 2L | 23513712 | 2L | 21659838..21660064 | 170..396 | 1135 | 100 | Plus |
| 2L | 23513712 | 2L | 21659151..21659272 | 50..171 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:28:10 has no hits.
UFO01161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:39 Download gff for
UFO01161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cul-2-RB | 155..1211 | 45..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:06 Download gff for
UFO01161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul-2-RA | 279..1335 | 45..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:26 Download gff for
UFO01161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul2-RA | 279..1335 | 45..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:26 Download gff for
UFO01161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21659146..21659272 | 45..171 | 98 | -> | Plus |
| 2L | 21659840..21660064 | 172..396 | 100 | -> | Plus |
| 2L | 21660123..21660827 | 397..1092 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:06 Download gff for
UFO01161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21659146..21659272 | 45..171 | 98 | -> | Plus |
| arm_2L | 21659840..21660064 | 172..396 | 100 | -> | Plus |
| arm_2L | 21660123..21660827 | 397..1092 | 97 | | Plus |
