UFO01162.5prime Sequence
1202 bp (1044 high quality bases) assembled on 2008-07-09
> UFO01162.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGGAGAGCGAGAAGATTCTAATGGCCGCCGGAGTGACGGTAGCCGC
CGTAGTCGGAGCCTTCGTTTTCTGGGGTCCTTCGGGTTCCCGTTTGCGTC
AACGACGCGGCCAAATTGCCGGTCTCCACAACTTTGGACTGACCTGCTTC
CTAAACACCCTGCTACAGGCGATGGCCGCCTGTCCCCAGTTCATTGCCTG
GCTGCAATTGTACAACAACGCCTCGCCGGATCGAAAAAGCTTAATTACGT
CGATGTTAAACACTCTGGAAGTGGTCAATGGCACCCATGCCACTCTGCGC
GGCGATCCCTATTCACCGGGAGCCGTTCTCCGGGCTCTGAATGCCCTGGG
CTGGGTGATTCCACAGGAGGAGCACGACGCCCACGAGCTGTTCCACGTGC
TATTGACCTGCCTGGAGGAGGAGGCCATACGACCACAGCCCCTCGGCTGT
CTGTCGGATGCTCTGCCCACGGATAACGATGATAACAGCAGCTTGGCAGG
CACAGCAACGCCAGTAGGGGGCTTTCGATCATTTAGCTCCATGGCAGCGG
GACTGGGAGCCAGCCAGAGGATCGGGGATCAACCGAACCGGCCCTCCAGT
GCCATGCTCACTGATTTCTTAAACATGGAGTATGATGAGAGCACCAGTTT
GCAGCGATTGGTGCGTTCCGAGGCCCACACACCGGATTCGCCTGCCTCTG
TTTGCGAACGCGACGGAAACGATCGCCTGGGATCCGTGCTTCTGGATGCC
GTTTCGCCAGGGACACCCTTTGGCTTTCCGCTCGTCAGCAATCCGGATTC
CTTGGCTACGCCTATGTTGGGCGGCGAGCGTTCGTCGCGACCGCGACTTC
CACAATCCCAACAGCAGCAGATGAGGGTCTGATCGCCGGTGTCCAGCTCC
TGTCGATCGCTAGAGCGCTGCATCGCGACAGTCGGTGTCATCTGTCACAT
GATGCCAGCAGTGGCGCATCGTTCAGCGCCATGGGCGCACAGATCGTGTG
CATGCTGCGCTCAGTCGCGTCGGTACGATAAGTCGACGCATAACGCTAAA
TCCGCGCGCCACGCGACCTGCTGGAAGGCCATGCTACGGAATTCACTCGA
GGATCTGAACGAGTTCAACGGTGGTATCTCTCTGCGCGAACCGGAGAACA
TA
UFO01162.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3016-RB | 2267 | CG3016-RB | 160..1238 | 53..1102 | 4720 | 97.3 | Plus |
| CG3016-RA | 2436 | CG3016-RA | 329..1407 | 53..1102 | 4720 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5878487..5879323 | 968..135 | 4035 | 99.6 | Minus |
| X | 23542271 | X | 5879375..5879459 | 137..53 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:00:15 has no hits.
UFO01162.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:15 Download gff for
UFO01162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 372..1465 | 47..1117 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:21 Download gff for
UFO01162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 326..1419 | 47..1117 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:52 Download gff for
UFO01162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 326..1419 | 47..1117 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:52 Download gff for
UFO01162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5878315..5879322 | 136..1117 | 96 | <- | Minus |
| X | 5879377..5879462 | 47..135 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:21 Download gff for
UFO01162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5772348..5773355 | 136..1117 | 96 | <- | Minus |
| arm_X | 5773410..5773495 | 47..135 | 96 | | Minus |
